Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.4■□□□□ 0.7
CLRN1P58418 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.4■□□□□ 0.7
CLRN1P58418 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 OR2I1P-207ENST00000453522 948 ntBASIC19.4■□□□□ 0.7
CLRN1P58418 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CLRN1P58418 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CLRN1P58418 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
CLRN1P58418 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.4■□□□□ 0.7
CLRN1P58418 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CLRN1P58418 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLRN1P58418 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLRN1P58418 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.39■□□□□ 0.7
CLRN1P58418 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLRN1P58418 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.39■□□□□ 0.69
CLRN1P58418 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.39■□□□□ 0.69
CLRN1P58418 AC011298.3-201ENST00000615796 283 ntBASIC19.39■□□□□ 0.69
CLRN1P58418 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLRN1P58418 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLRN1P58418 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.39■□□□□ 0.69
CLRN1P58418 AC092053.2-201ENST00000640557 1818 ntBASIC19.39■□□□□ 0.69
CLRN1P58418 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLRN1P58418 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.39■□□□□ 0.69
CLRN1P58418 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CLRN1P58418 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CLRN1P58418 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLRN1P58418 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.39■□□□□ 0.69
CLRN1P58418 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.39■□□□□ 0.69
CLRN1P58418 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLRN1P58418 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CLRN1P58418 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.38■□□□□ 0.69
CLRN1P58418 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.38■□□□□ 0.69
CLRN1P58418 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.38■□□□□ 0.69
CLRN1P58418 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.38■□□□□ 0.69
CLRN1P58418 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLRN1P58418 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLRN1P58418 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
CLRN1P58418 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.38■□□□□ 0.69
CLRN1P58418 AC137767.1-201ENST00000602918 1920 ntBASIC19.38■□□□□ 0.69
CLRN1P58418 CA15P2-201ENST00000611168 834 ntBASIC19.38■□□□□ 0.69
CLRN1P58418 AC136469.2-201ENST00000623944 1028 ntBASIC19.38■□□□□ 0.69
CLRN1P58418 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CLRN1P58418 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 AC139530.1-201ENST00000575312 1977 ntBASIC19.37■□□□□ 0.69
CLRN1P58418 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CLRN1P58418 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CLRN1P58418 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.37■□□□□ 0.69
CLRN1P58418 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.37■□□□□ 0.69
CLRN1P58418 AC087239.1-201ENST00000622671 572 ntBASIC19.37■□□□□ 0.69
CLRN1P58418 AL031602.1-201ENST00000633169 911 ntBASIC19.37■□□□□ 0.69
CLRN1P58418 AC068587.7-201ENST00000641602 218 ntBASIC19.37■□□□□ 0.69
CLRN1P58418 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.37■□□□□ 0.69
CLRN1P58418 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CLRN1P58418 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN1P58418 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.37■□□□□ 0.69
CLRN1P58418 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CLRN1P58418 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CLRN1P58418 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.36■□□□□ 0.69
CLRN1P58418 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
CLRN1P58418 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CLRN1P58418 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
CLRN1P58418 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CLRN1P58418 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN1P58418 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.35■□□□□ 0.69
CLRN1P58418 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.35■□□□□ 0.69
CLRN1P58418 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CLRN1P58418 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.35■□□□□ 0.69
CLRN1P58418 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms