Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC14.3□□□□□ -0.12
RPL28P46779 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC14.3□□□□□ -0.12
RPL28P46779 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
RPL28P46779 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
RPL28P46779 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC14.29□□□□□ -0.12
RPL28P46779 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
RPL28P46779 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC14.29□□□□□ -0.12
RPL28P46779 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RPL28P46779 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 AC087742.1-201ENST00000575880 1738 ntBASIC14.29□□□□□ -0.12
RPL28P46779 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
RPL28P46779 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC14.29□□□□□ -0.12
RPL28P46779 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL28P46779 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL28P46779 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL28P46779 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
RPL28P46779 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL28P46779 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPL28P46779 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RPL28P46779 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC14.28□□□□□ -0.12
RPL28P46779 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC14.28□□□□□ -0.12
RPL28P46779 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC14.28□□□□□ -0.12
RPL28P46779 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC14.28□□□□□ -0.12
RPL28P46779 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC14.28□□□□□ -0.12
RPL28P46779 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC14.28□□□□□ -0.12
RPL28P46779 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL28P46779 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPL28P46779 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC14.28□□□□□ -0.12
RPL28P46779 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RPL28P46779 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL28P46779 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC14.27□□□□□ -0.12
RPL28P46779 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RPL28P46779 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC14.27□□□□□ -0.12
RPL28P46779 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
RPL28P46779 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC14.27□□□□□ -0.12
RPL28P46779 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RPL28P46779 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL28P46779 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL28P46779 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL28P46779 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL28P46779 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RPL28P46779 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL28P46779 IDNK-201ENST00000376417 511 ntTSL 5 BASIC14.27□□□□□ -0.13
RPL28P46779 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC14.27□□□□□ -0.13
RPL28P46779 YBX1P4-201ENST00000392794 808 ntBASIC14.27□□□□□ -0.13
RPL28P46779 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RPL28P46779 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC14.27□□□□□ -0.13
RPL28P46779 AC010980.1-201ENST00000587192 1142 ntBASIC14.27□□□□□ -0.13
RPL28P46779 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
RPL28P46779 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC14.27□□□□□ -0.13
RPL28P46779 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL28P46779 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
RPL28P46779 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RPL28P46779 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL28P46779 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL28P46779 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
RPL28P46779 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL28P46779 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC14.26□□□□□ -0.13
RPL28P46779 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
RPL28P46779 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
RPL28P46779 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL28P46779 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC14.26□□□□□ -0.13
RPL28P46779 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL28P46779 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RPL28P46779 AL157384.1-201ENST00000445995 2473 ntBASIC14.25□□□□□ -0.13
RPL28P46779 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL28P46779 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RPL28P46779 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms