Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-1P43699 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-1P43699 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC17.75■□□□□ 0.43
NKX2-1P43699 AC019171.1-201ENST00000601251 1056 ntBASIC17.75■□□□□ 0.43
NKX2-1P43699 BRD4-212ENST00000630599 726 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-1P43699 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.75■□□□□ 0.43
NKX2-1P43699 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-1P43699 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-1P43699 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-1P43699 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.75■□□□□ 0.43
NKX2-1P43699 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-1P43699 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NKX2-1P43699 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-1P43699 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-1P43699 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-1P43699 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.75■□□□□ 0.43
NKX2-1P43699 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.74■□□□□ 0.43
NKX2-1P43699 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.74■□□□□ 0.43
NKX2-1P43699 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
NKX2-1P43699 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
NKX2-1P43699 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC17.74■□□□□ 0.43
NKX2-1P43699 AC120024.1-201ENST00000562672 995 ntBASIC17.74■□□□□ 0.43
NKX2-1P43699 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC17.74■□□□□ 0.43
NKX2-1P43699 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC17.74■□□□□ 0.43
NKX2-1P43699 LINC01529-204ENST00000636474 1715 ntBASIC17.74■□□□□ 0.43
NKX2-1P43699 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.74■□□□□ 0.43
NKX2-1P43699 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.74■□□□□ 0.43
NKX2-1P43699 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-1P43699 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NKX2-1P43699 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.73■□□□□ 0.43
NKX2-1P43699 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.73■□□□□ 0.43
NKX2-1P43699 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC17.73■□□□□ 0.43
NKX2-1P43699 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NKX2-1P43699 LSM7-203ENST00000585409 512 ntTSL 2 BASIC17.73■□□□□ 0.43
NKX2-1P43699 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NKX2-1P43699 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
NKX2-1P43699 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
NKX2-1P43699 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.72■□□□□ 0.43
NKX2-1P43699 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
NKX2-1P43699 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC17.72■□□□□ 0.43
NKX2-1P43699 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC17.72■□□□□ 0.43
NKX2-1P43699 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
NKX2-1P43699 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NKX2-1P43699 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.71■□□□□ 0.43
NKX2-1P43699 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
NKX2-1P43699 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 MTX2-204ENST00000443241 799 ntTSL 3 BASIC17.71■□□□□ 0.43
NKX2-1P43699 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
NKX2-1P43699 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NKX2-1P43699 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
NKX2-1P43699 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
NKX2-1P43699 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
NKX2-1P43699 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
NKX2-1P43699 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.7■□□□□ 0.42
NKX2-1P43699 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms