Protein–RNA interactions for Protein: P01562

IFNA1, Interferon alpha-1/13, humanhuman

Predictions only

Length 189 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFNA1P01562 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
IFNA1P01562 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
IFNA1P01562 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
IFNA1P01562 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.21■□□□□ 0.35
IFNA1P01562 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC17.21■□□□□ 0.35
IFNA1P01562 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
IFNA1P01562 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
IFNA1P01562 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
IFNA1P01562 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.21■□□□□ 0.35
IFNA1P01562 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.21■□□□□ 0.35
IFNA1P01562 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
IFNA1P01562 AL353803.4-201ENST00000565882 1934 ntBASIC17.21■□□□□ 0.35
IFNA1P01562 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.21■□□□□ 0.35
IFNA1P01562 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
IFNA1P01562 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.21■□□□□ 0.35
IFNA1P01562 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.21■□□□□ 0.35
IFNA1P01562 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
IFNA1P01562 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
IFNA1P01562 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
IFNA1P01562 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.2■□□□□ 0.34
IFNA1P01562 AC093536.1-201ENST00000569153 554 ntBASIC17.2■□□□□ 0.34
IFNA1P01562 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
IFNA1P01562 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.2■□□□□ 0.34
IFNA1P01562 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.2■□□□□ 0.34
IFNA1P01562 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
IFNA1P01562 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
IFNA1P01562 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC17.2■□□□□ 0.34
IFNA1P01562 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IFNA1P01562 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
IFNA1P01562 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
IFNA1P01562 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.19■□□□□ 0.34
IFNA1P01562 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
IFNA1P01562 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.19■□□□□ 0.34
IFNA1P01562 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.19■□□□□ 0.34
IFNA1P01562 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
IFNA1P01562 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
IFNA1P01562 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.19■□□□□ 0.34
IFNA1P01562 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IFNA1P01562 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
IFNA1P01562 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.18■□□□□ 0.34
IFNA1P01562 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
IFNA1P01562 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.17■□□□□ 0.34
IFNA1P01562 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.17■□□□□ 0.34
IFNA1P01562 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
IFNA1P01562 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
IFNA1P01562 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
IFNA1P01562 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
IFNA1P01562 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.17■□□□□ 0.34
IFNA1P01562 AGPS-202ENST00000409888 815 ntTSL 4 BASIC17.17■□□□□ 0.34
IFNA1P01562 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC17.17■□□□□ 0.34
IFNA1P01562 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.17■□□□□ 0.34
IFNA1P01562 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.17■□□□□ 0.34
IFNA1P01562 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.17■□□□□ 0.34
IFNA1P01562 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
IFNA1P01562 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.16■□□□□ 0.34
IFNA1P01562 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.16■□□□□ 0.34
IFNA1P01562 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.16■□□□□ 0.34
IFNA1P01562 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
IFNA1P01562 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
IFNA1P01562 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
IFNA1P01562 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
IFNA1P01562 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.15■□□□□ 0.34
IFNA1P01562 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
IFNA1P01562 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
IFNA1P01562 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms