Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.9■□□□□ 0.94
LDLRP01130 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDLRP01130 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
LDLRP01130 AL136967.2-201ENST00000623968 743 ntBASIC20.9■□□□□ 0.94
LDLRP01130 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.9■□□□□ 0.94
LDLRP01130 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDLRP01130 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDLRP01130 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDLRP01130 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.89■□□□□ 0.94
LDLRP01130 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.89■□□□□ 0.93
LDLRP01130 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LDLRP01130 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LDLRP01130 AC097381.1-201ENST00000429019 1296 ntBASIC20.89■□□□□ 0.93
LDLRP01130 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.89■□□□□ 0.93
LDLRP01130 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.89■□□□□ 0.93
LDLRP01130 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LDLRP01130 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.89■□□□□ 0.93
LDLRP01130 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.89■□□□□ 0.93
LDLRP01130 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LDLRP01130 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LDLRP01130 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LDLRP01130 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LDLRP01130 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
LDLRP01130 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
LDLRP01130 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
LDLRP01130 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.88■□□□□ 0.93
LDLRP01130 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 SRD5A1P1-201ENST00000442297 786 ntBASIC20.88■□□□□ 0.93
LDLRP01130 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.88■□□□□ 0.93
LDLRP01130 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.88■□□□□ 0.93
LDLRP01130 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.88■□□□□ 0.93
LDLRP01130 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.88■□□□□ 0.93
LDLRP01130 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.88■□□□□ 0.93
LDLRP01130 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
LDLRP01130 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDLRP01130 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.87■□□□□ 0.93
LDLRP01130 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
LDLRP01130 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.87■□□□□ 0.93
LDLRP01130 AF213884.3-201ENST00000563833 479 ntBASIC20.87■□□□□ 0.93
LDLRP01130 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LDLRP01130 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 AC079630.1-202ENST00000618127 1840 ntBASIC20.87■□□□□ 0.93
LDLRP01130 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.87■□□□□ 0.93
LDLRP01130 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LDLRP01130 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LDLRP01130 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
LDLRP01130 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LDLRP01130 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDLRP01130 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.86■□□□□ 0.93
LDLRP01130 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.86■□□□□ 0.93
LDLRP01130 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
LDLRP01130 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.86■□□□□ 0.93
LDLRP01130 AL162430.1-201ENST00000480705 870 ntBASIC20.86■□□□□ 0.93
LDLRP01130 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.86■□□□□ 0.93
LDLRP01130 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.86■□□□□ 0.93
LDLRP01130 FBXW4P1-201ENST00000426721 2239 ntBASIC20.86■□□□□ 0.93
LDLRP01130 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.86■□□□□ 0.93
LDLRP01130 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
LDLRP01130 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDLRP01130 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDLRP01130 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.85■□□□□ 0.93
LDLRP01130 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LDLRP01130 MIR939-201ENST00000401314 82 ntBASIC20.85■□□□□ 0.93
LDLRP01130 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.85■□□□□ 0.93
LDLRP01130 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.85■□□□□ 0.93
LDLRP01130 MIR6722-201ENST00000617286 78 ntBASIC20.85■□□□□ 0.93
LDLRP01130 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.85■□□□□ 0.93
LDLRP01130 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LDLRP01130 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDLRP01130 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDLRP01130 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LDLRP01130 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDLRP01130 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.85■□□□□ 0.93
LDLRP01130 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.84■□□□□ 0.93
LDLRP01130 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.84■□□□□ 0.93
LDLRP01130 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
LDLRP01130 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.84■□□□□ 0.93
LDLRP01130 AC087623.3-201ENST00000607047 1098 ntBASIC20.84■□□□□ 0.93
LDLRP01130 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms