Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
TRIM13O60858 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
TRIM13O60858 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.4■■□□□ 1.02
TRIM13O60858 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TRIM13O60858 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TRIM13O60858 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM13O60858 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.39■■□□□ 1.01
TRIM13O60858 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.39■■□□□ 1.01
TRIM13O60858 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM13O60858 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM13O60858 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM13O60858 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.39■■□□□ 1.01
TRIM13O60858 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.39■■□□□ 1.01
TRIM13O60858 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.39■■□□□ 1.01
TRIM13O60858 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM13O60858 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM13O60858 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM13O60858 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
TRIM13O60858 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.38■■□□□ 1.01
TRIM13O60858 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
TRIM13O60858 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.38■■□□□ 1.01
TRIM13O60858 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.38■■□□□ 1.01
TRIM13O60858 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
TRIM13O60858 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM13O60858 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
TRIM13O60858 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
TRIM13O60858 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM13O60858 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM13O60858 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
TRIM13O60858 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.37■■□□□ 1.01
TRIM13O60858 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.37■■□□□ 1.01
TRIM13O60858 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM13O60858 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.37■■□□□ 1.01
TRIM13O60858 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.37■■□□□ 1.01
TRIM13O60858 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.37■■□□□ 1.01
TRIM13O60858 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM13O60858 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
TRIM13O60858 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM13O60858 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM13O60858 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
TRIM13O60858 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM13O60858 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
TRIM13O60858 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 C17orf82-201ENST00000623772 1530 ntBASIC21.36■■□□□ 1.01
TRIM13O60858 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRIM13O60858 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
TRIM13O60858 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRIM13O60858 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
TRIM13O60858 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
TRIM13O60858 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.36■■□□□ 1.01
TRIM13O60858 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM13O60858 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM13O60858 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM13O60858 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.35■■□□□ 1.01
TRIM13O60858 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.35■■□□□ 1.01
TRIM13O60858 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM13O60858 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM13O60858 AC005229.4-201ENST00000610085 2198 ntBASIC21.34■■□□□ 1.01
TRIM13O60858 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM13O60858 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM13O60858 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TRIM13O60858 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM13O60858 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
TRIM13O60858 MTDHP2-201ENST00000601468 714 ntBASIC21.34■■□□□ 1.01
TRIM13O60858 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM13O60858 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM13O60858 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM13O60858 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM13O60858 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM13O60858 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM13O60858 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.33■■□□□ 1.01
TRIM13O60858 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.33■■□□□ 1.01
TRIM13O60858 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM13O60858 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
TRIM13O60858 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.33■■□□□ 1
TRIM13O60858 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.33■■□□□ 1
TRIM13O60858 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.33■■□□□ 1
TRIM13O60858 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM13O60858 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM13O60858 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM13O60858 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRIM13O60858 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.32■■□□□ 1
TRIM13O60858 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM13O60858 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms