Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.45■■□□□ 1.02
SNX3O60493 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.44■■□□□ 1.02
SNX3O60493 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.44■■□□□ 1.02
SNX3O60493 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
SNX3O60493 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SNX3O60493 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SNX3O60493 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SNX3O60493 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SNX3O60493 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
SNX3O60493 LONRF2P2-201ENST00000439212 571 ntBASIC21.44■■□□□ 1.02
SNX3O60493 SPCS2P3-201ENST00000500401 656 ntBASIC21.44■■□□□ 1.02
SNX3O60493 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.44■■□□□ 1.02
SNX3O60493 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SNX3O60493 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SNX3O60493 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.44■■□□□ 1.02
SNX3O60493 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.44■■□□□ 1.02
SNX3O60493 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SNX3O60493 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.44■■□□□ 1.02
SNX3O60493 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.44■■□□□ 1.02
SNX3O60493 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
SNX3O60493 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
SNX3O60493 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
SNX3O60493 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.43■■□□□ 1.02
SNX3O60493 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SNX3O60493 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.43■■□□□ 1.02
SNX3O60493 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SNX3O60493 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SNX3O60493 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.43■■□□□ 1.02
SNX3O60493 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SNX3O60493 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.43■■□□□ 1.02
SNX3O60493 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
SNX3O60493 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SNX3O60493 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SNX3O60493 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SNX3O60493 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SNX3O60493 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
SNX3O60493 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.42■■□□□ 1.02
SNX3O60493 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
SNX3O60493 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.42■■□□□ 1.02
SNX3O60493 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.42■■□□□ 1.02
SNX3O60493 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
SNX3O60493 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.42■■□□□ 1.02
SNX3O60493 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SNX3O60493 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.42■■□□□ 1.02
SNX3O60493 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SNX3O60493 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
SNX3O60493 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
SNX3O60493 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
SNX3O60493 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.41■■□□□ 1.02
SNX3O60493 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.41■■□□□ 1.02
SNX3O60493 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SNX3O60493 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.41■■□□□ 1.02
SNX3O60493 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
SNX3O60493 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 FEM1AP1-201ENST00000431297 1995 ntBASIC21.41■■□□□ 1.02
SNX3O60493 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
SNX3O60493 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SNX3O60493 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.4■■□□□ 1.02
SNX3O60493 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SNX3O60493 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms