Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H4Q96RI1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H4Q96RI1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H4Q96RI1 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.53■□□□□ 0.88
NR1H4Q96RI1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 AC126177.7-201ENST00000547904 679 ntBASIC20.52■□□□□ 0.88
NR1H4Q96RI1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H4Q96RI1 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.87
NR1H4Q96RI1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NR1H4Q96RI1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.52■□□□□ 0.87
NR1H4Q96RI1 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
NR1H4Q96RI1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 FEM1AP4-201ENST00000443167 1987 ntBASIC20.5■□□□□ 0.87
NR1H4Q96RI1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NR1H4Q96RI1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NR1H4Q96RI1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
NR1H4Q96RI1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.49■□□□□ 0.87
NR1H4Q96RI1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NR1H4Q96RI1 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NR1H4Q96RI1 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
NR1H4Q96RI1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NR1H4Q96RI1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NR1H4Q96RI1 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NR1H4Q96RI1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms