Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC65Q8IXS2 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC65Q8IXS2 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC24.24■■□□□ 1.47
CCDC65Q8IXS2 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC65Q8IXS2 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 RBM38-205ENST00000440234 686 ntTSL 2 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 LINC00526-201ENST00000581067 1875 ntBASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.23■■□□□ 1.47
CCDC65Q8IXS2 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 AL136162.1-201ENST00000607711 1078 ntBASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 AC139530.1-201ENST00000575312 1977 ntBASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC65Q8IXS2 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 EP400NL-214ENST00000641289 2402 ntBASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
CCDC65Q8IXS2 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC65Q8IXS2 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 AC096631.2-201ENST00000436136 790 ntBASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 SLC47A1P1-202ENST00000449666 945 ntBASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 AC024257.2-201ENST00000549699 147 ntBASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC65Q8IXS2 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 AC135279.3-201ENST00000610945 1311 ntBASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 MIR4767-201ENST00000582827 78 ntBASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 AC087239.1-201ENST00000622671 572 ntBASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.18■■□□□ 1.46
CCDC65Q8IXS2 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 SNX3-202ENST00000349379 890 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 AC092053.2-201ENST00000640557 1818 ntBASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC65Q8IXS2 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms