Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIST1H1AQ02539 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 CLTA-206ENST00000466396 695 ntTSL 2 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIST1H1AQ02539 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 LINC01529-204ENST00000636474 1715 ntBASIC16.59■□□□□ 0.25
HIST1H1AQ02539 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 AC009299.2-201ENST00000482477 511 ntBASIC16.59■□□□□ 0.25
HIST1H1AQ02539 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIST1H1AQ02539 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HIST1H1AQ02539 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC16.58■□□□□ 0.25
HIST1H1AQ02539 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HIST1H1AQ02539 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HIST1H1AQ02539 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 AC010997.5-201ENST00000609182 354 ntBASIC16.58■□□□□ 0.24
HIST1H1AQ02539 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.58■□□□□ 0.24
HIST1H1AQ02539 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIST1H1AQ02539 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 AL451085.2-201ENST00000605085 799 ntBASIC16.56■□□□□ 0.24
HIST1H1AQ02539 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HIST1H1AQ02539 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 TFPT-201ENST00000391757 774 ntTSL 5 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 HES6-204ENST00000409182 863 ntTSL 2 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 EXOG-217ENST00000630638 197 ntTSL 5 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 AL137060.1-201ENST00000618151 2648 ntBASIC16.55■□□□□ 0.24
HIST1H1AQ02539 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIST1H1AQ02539 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms