Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.96■■□□□ 1.43
TPM1P09493 MIR4508-201ENST00000584178 70 ntBASIC23.96■■□□□ 1.43
TPM1P09493 AC009086.3-201ENST00000623486 1008 ntBASIC23.96■■□□□ 1.43
TPM1P09493 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TPM1P09493 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TPM1P09493 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TPM1P09493 LINC01960-201ENST00000563759 1884 ntBASIC23.96■■□□□ 1.43
TPM1P09493 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
TPM1P09493 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
TPM1P09493 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.95■■□□□ 1.43
TPM1P09493 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
TPM1P09493 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC23.95■■□□□ 1.42
TPM1P09493 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.95■■□□□ 1.42
TPM1P09493 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 AC005703.6-201ENST00000623265 1329 ntBASIC23.95■■□□□ 1.42
TPM1P09493 TSPY13P-201ENST00000338964 914 ntBASIC23.95■■□□□ 1.42
TPM1P09493 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.95■■□□□ 1.42
TPM1P09493 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.95■■□□□ 1.42
TPM1P09493 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
TPM1P09493 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
TPM1P09493 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.94■■□□□ 1.42
TPM1P09493 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.94■■□□□ 1.42
TPM1P09493 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.94■■□□□ 1.42
TPM1P09493 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC23.94■■□□□ 1.42
TPM1P09493 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
TPM1P09493 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TPM1P09493 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.93■■□□□ 1.42
TPM1P09493 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.93■■□□□ 1.42
TPM1P09493 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TPM1P09493 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.93■■□□□ 1.42
TPM1P09493 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TPM1P09493 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
TPM1P09493 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.93■■□□□ 1.42
TPM1P09493 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TPM1P09493 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TPM1P09493 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.93■■□□□ 1.42
TPM1P09493 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
TPM1P09493 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
TPM1P09493 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC23.92■■□□□ 1.42
TPM1P09493 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.92■■□□□ 1.42
TPM1P09493 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.92■■□□□ 1.42
TPM1P09493 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
TPM1P09493 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.92■■□□□ 1.42
TPM1P09493 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.92■■□□□ 1.42
TPM1P09493 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TPM1P09493 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TPM1P09493 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.92■■□□□ 1.42
TPM1P09493 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC23.92■■□□□ 1.42
TPM1P09493 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
TPM1P09493 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC23.91■■□□□ 1.42
TPM1P09493 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.91■■□□□ 1.42
TPM1P09493 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
TPM1P09493 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.91■■□□□ 1.42
TPM1P09493 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
TPM1P09493 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC23.91■■□□□ 1.42
TPM1P09493 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.91■■□□□ 1.42
TPM1P09493 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
TPM1P09493 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TPM1P09493 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC23.9■■□□□ 1.42
TPM1P09493 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
TPM1P09493 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
TPM1P09493 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
TPM1P09493 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.9■■□□□ 1.42
TPM1P09493 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
TPM1P09493 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
TPM1P09493 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TPM1P09493 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.89■■□□□ 1.42
TPM1P09493 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
TPM1P09493 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
TPM1P09493 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.89■■□□□ 1.41
TPM1P09493 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
TPM1P09493 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.89■■□□□ 1.41
TPM1P09493 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
TPM1P09493 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TPM1P09493 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TPM1P09493 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TPM1P09493 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
TPM1P09493 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.88■■□□□ 1.41
TPM1P09493 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms