Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 EDA-201ENST00000338901 1233 ntBASIC19.17■□□□□ 0.66
LMX1BO60663 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LMX1BO60663 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 AC137767.1-201ENST00000602918 1920 ntBASIC19.16■□□□□ 0.66
LMX1BO60663 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.16■□□□□ 0.66
LMX1BO60663 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
LMX1BO60663 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.16■□□□□ 0.66
LMX1BO60663 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.16■□□□□ 0.66
LMX1BO60663 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.16■□□□□ 0.66
LMX1BO60663 AL355001.2-201ENST00000620617 1191 ntBASIC19.16■□□□□ 0.66
LMX1BO60663 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LMX1BO60663 LINC01529-204ENST00000636474 1715 ntBASIC19.16■□□□□ 0.66
LMX1BO60663 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LMX1BO60663 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 AC092053.2-201ENST00000640557 1818 ntBASIC19.16■□□□□ 0.66
LMX1BO60663 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.16■□□□□ 0.66
LMX1BO60663 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LMX1BO60663 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1BO60663 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1BO60663 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1BO60663 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1BO60663 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.15■□□□□ 0.66
LMX1BO60663 AC026271.2-201ENST00000428091 497 ntBASIC19.15■□□□□ 0.66
LMX1BO60663 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.15■□□□□ 0.66
LMX1BO60663 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1BO60663 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.15■□□□□ 0.66
LMX1BO60663 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.15■□□□□ 0.66
LMX1BO60663 AL031432.3-201ENST00000607698 485 ntBASIC19.15■□□□□ 0.66
LMX1BO60663 MIR5787-201ENST00000611784 55 ntBASIC19.15■□□□□ 0.66
LMX1BO60663 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
LMX1BO60663 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LMX1BO60663 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LMX1BO60663 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LMX1BO60663 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1BO60663 C11orf96-202ENST00000528572 1834 ntBASIC19.14■□□□□ 0.65
LMX1BO60663 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.14■□□□□ 0.65
LMX1BO60663 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
LMX1BO60663 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1BO60663 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1BO60663 AC024257.2-201ENST00000549699 147 ntBASIC19.14■□□□□ 0.65
LMX1BO60663 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
LMX1BO60663 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1BO60663 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1BO60663 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1BO60663 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1BO60663 AC104564.3-201ENST00000582367 638 ntBASIC19.13■□□□□ 0.65
LMX1BO60663 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.13■□□□□ 0.65
LMX1BO60663 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LMX1BO60663 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.13■□□□□ 0.65
LMX1BO60663 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1BO60663 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.13■□□□□ 0.65
LMX1BO60663 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.12■□□□□ 0.65
LMX1BO60663 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1BO60663 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1BO60663 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1BO60663 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1BO60663 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.12■□□□□ 0.65
LMX1BO60663 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.12■□□□□ 0.65
LMX1BO60663 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1BO60663 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LMX1BO60663 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1BO60663 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1BO60663 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
LMX1BO60663 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1BO60663 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.11■□□□□ 0.65
LMX1BO60663 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
LMX1BO60663 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1BO60663 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
LMX1BO60663 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.1■□□□□ 0.65
LMX1BO60663 DUX4L19-201ENST00000557448 1267 ntBASIC19.1■□□□□ 0.65
LMX1BO60663 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
LMX1BO60663 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1BO60663 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.1■□□□□ 0.65
LMX1BO60663 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LMX1BO60663 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.09■□□□□ 0.65
LMX1BO60663 FP325331.1-202ENST00000623531 1380 ntBASIC19.09■□□□□ 0.65
LMX1BO60663 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.09■□□□□ 0.65
LMX1BO60663 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms