Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 AC142381.3-201ENST00000568208 1670 ntBASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 AL162430.1-201ENST00000480705 870 ntBASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRAV20A0A0B4J274 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 AL499627.2-201ENST00000606283 725 ntBASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV20A0A0B4J274 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 IGHV3-19-201ENST00000521488 291 ntBASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 DUX4L4-201ENST00000566884 1269 ntBASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 AL358852.1-201ENST00000623174 1268 ntBASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV20A0A0B4J274 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV20A0A0B4J274 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
TRAV20A0A0B4J274 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 YBX1P1-201ENST00000445822 960 ntBASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV20A0A0B4J274 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV20A0A0B4J274 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRAV20A0A0B4J274 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAV20A0A0B4J274 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV20A0A0B4J274 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV20A0A0B4J274 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.37■□□□□ 0.53
TRAV20A0A0B4J274 AC034268.1-201ENST00000441047 882 ntBASIC18.37■□□□□ 0.53
TRAV20A0A0B4J274 OR2I1P-207ENST00000453522 948 ntBASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms