Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 AL136116.3-201ENST00000402907 1138 ntBASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 AC009102.2-201ENST00000606772 1639 ntBASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 LINC01529-204ENST00000636474 1715 ntBASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SEC61A2Q9H9S3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 FP325331.1-202ENST00000623531 1380 ntBASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SEC61A2Q9H9S3 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SEC61A2Q9H9S3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEC61A2Q9H9S3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEC61A2Q9H9S3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEC61A2Q9H9S3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SEC61A2Q9H9S3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 AC233723.2-201ENST00000623798 2106 ntBASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEC61A2Q9H9S3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.65■□□□□ 0.74
SEC61A2Q9H9S3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.64■□□□□ 0.74
SEC61A2Q9H9S3 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SEC61A2Q9H9S3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SEC61A2Q9H9S3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SEC61A2Q9H9S3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SEC61A2Q9H9S3 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms