Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC144BQ3MJ40 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 STK25-234ENST00000535007 2459 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC144BQ3MJ40 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CCDC144BQ3MJ40 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 pRNA.6-201ENST00000610482 90 ntBASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 pRNA.5-201ENST00000612139 90 ntBASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 pRNA.11-201ENST00000618423 90 ntBASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 pRNA.13-201ENST00000619112 90 ntBASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC25.57■■□□□ 1.68
CCDC144BQ3MJ40 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 SP2-202ENST00000613139 908 ntTSL 5 BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC144BQ3MJ40 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.55■■□□□ 1.68
CCDC144BQ3MJ40 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.55■■□□□ 1.68
CCDC144BQ3MJ40 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC144BQ3MJ40 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 ALDH1A3-203ENST00000557963 1670 ntBASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC144BQ3MJ40 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
CCDC144BQ3MJ40 AC233723.2-201ENST00000623798 2106 ntBASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 AC126544.1-201ENST00000580842 1059 ntBASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
CCDC144BQ3MJ40 LINC00565-201ENST00000562710 2331 ntBASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC144BQ3MJ40 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.5■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms