Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.9■■□□□ 1.1
LIMK1P53667 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.9■■□□□ 1.1
LIMK1P53667 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.9■■□□□ 1.1
LIMK1P53667 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.9■■□□□ 1.1
LIMK1P53667 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMK1P53667 AP004607.4-201ENST00000530158 1459 ntBASIC21.9■■□□□ 1.1
LIMK1P53667 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LIMK1P53667 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.89■■□□□ 1.09
LIMK1P53667 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.89■■□□□ 1.09
LIMK1P53667 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.89■■□□□ 1.09
LIMK1P53667 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.89■■□□□ 1.09
LIMK1P53667 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LIMK1P53667 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
LIMK1P53667 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
LIMK1P53667 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.88■■□□□ 1.09
LIMK1P53667 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.88■■□□□ 1.09
LIMK1P53667 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
LIMK1P53667 KRT18P11-201ENST00000435214 1283 ntBASIC21.88■■□□□ 1.09
LIMK1P53667 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.88■■□□□ 1.09
LIMK1P53667 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.88■■□□□ 1.09
LIMK1P53667 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.88■■□□□ 1.09
LIMK1P53667 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.88■■□□□ 1.09
LIMK1P53667 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.88■■□□□ 1.09
LIMK1P53667 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
LIMK1P53667 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
LIMK1P53667 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMK1P53667 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 MIR663A-201ENST00000385250 93 ntBASIC21.87■■□□□ 1.09
LIMK1P53667 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.87■■□□□ 1.09
LIMK1P53667 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.87■■□□□ 1.09
LIMK1P53667 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
LIMK1P53667 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
LIMK1P53667 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 AL161729.1-201ENST00000604104 1402 ntBASIC21.87■■□□□ 1.09
LIMK1P53667 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMK1P53667 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIMK1P53667 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LIMK1P53667 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
LIMK1P53667 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIMK1P53667 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.86■■□□□ 1.09
LIMK1P53667 KRT19P1-201ENST00000405746 1186 ntBASIC21.86■■□□□ 1.09
LIMK1P53667 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.86■■□□□ 1.09
LIMK1P53667 DUX4L4-201ENST00000566884 1269 ntBASIC21.86■■□□□ 1.09
LIMK1P53667 AC010525.1-201ENST00000585559 441 ntBASIC21.86■■□□□ 1.09
LIMK1P53667 TPRG1LP1-201ENST00000598702 760 ntBASIC21.86■■□□□ 1.09
LIMK1P53667 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.86■■□□□ 1.09
LIMK1P53667 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIMK1P53667 AC012676.1-201ENST00000574705 1949 ntBASIC21.86■■□□□ 1.09
LIMK1P53667 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LIMK1P53667 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.85■■□□□ 1.09
LIMK1P53667 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LIMK1P53667 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.85■■□□□ 1.09
LIMK1P53667 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
LIMK1P53667 KRT18P6-201ENST00000555540 1265 ntBASIC21.85■■□□□ 1.09
LIMK1P53667 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LIMK1P53667 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.85■■□□□ 1.09
LIMK1P53667 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LIMK1P53667 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.85■■□□□ 1.09
LIMK1P53667 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LIMK1P53667 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LIMK1P53667 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
LIMK1P53667 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.85■■□□□ 1.09
LIMK1P53667 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LIMK1P53667 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LIMK1P53667 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.84■■□□□ 1.09
LIMK1P53667 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LIMK1P53667 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LIMK1P53667 AC004854.2-201ENST00000608450 1441 ntBASIC21.83■■□□□ 1.09
LIMK1P53667 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIMK1P53667 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIMK1P53667 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.83■■□□□ 1.09
LIMK1P53667 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.83■■□□□ 1.09
LIMK1P53667 MIR6089-201ENST00000616698 64 ntBASIC21.83■■□□□ 1.09
LIMK1P53667 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
LIMK1P53667 AC138932.3-201ENST00000567634 1902 ntBASIC21.82■■□□□ 1.08
LIMK1P53667 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMK1P53667 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMK1P53667 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms