Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFBP01127 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFBP01127 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
PDGFBP01127 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFBP01127 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC22.53■■□□□ 1.2
PDGFBP01127 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.53■■□□□ 1.2
PDGFBP01127 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFBP01127 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.53■■□□□ 1.2
PDGFBP01127 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PDGFBP01127 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PDGFBP01127 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.52■■□□□ 1.2
PDGFBP01127 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PDGFBP01127 DUX4L16-201ENST00000555130 1264 ntBASIC22.52■■□□□ 1.2
PDGFBP01127 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
PDGFBP01127 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PDGFBP01127 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFBP01127 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
PDGFBP01127 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
PDGFBP01127 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFBP01127 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.51■■□□□ 1.19
PDGFBP01127 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.51■■□□□ 1.19
PDGFBP01127 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFBP01127 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFBP01127 POU5F1P3-201ENST00000428824 1078 ntBASIC22.51■■□□□ 1.19
PDGFBP01127 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.51■■□□□ 1.19
PDGFBP01127 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFBP01127 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFBP01127 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
PDGFBP01127 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFBP01127 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFBP01127 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.5■■□□□ 1.19
PDGFBP01127 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.5■■□□□ 1.19
PDGFBP01127 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFBP01127 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.5■■□□□ 1.19
PDGFBP01127 AC007322.1-201ENST00000426983 750 ntBASIC22.5■■□□□ 1.19
PDGFBP01127 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.5■■□□□ 1.19
PDGFBP01127 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.5■■□□□ 1.19
PDGFBP01127 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
PDGFBP01127 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC22.5■■□□□ 1.19
PDGFBP01127 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
PDGFBP01127 AC231657.2-201ENST00000624556 255 ntBASIC22.5■■□□□ 1.19
PDGFBP01127 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFBP01127 FP325331.1-202ENST00000623531 1380 ntBASIC22.5■■□□□ 1.19
PDGFBP01127 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFBP01127 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFBP01127 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.49■■□□□ 1.19
PDGFBP01127 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFBP01127 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFBP01127 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFBP01127 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.49■■□□□ 1.19
PDGFBP01127 AC079140.4-201ENST00000507448 529 ntBASIC22.49■■□□□ 1.19
PDGFBP01127 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC22.49■■□□□ 1.19
PDGFBP01127 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.49■■□□□ 1.19
PDGFBP01127 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFBP01127 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFBP01127 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFBP01127 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFBP01127 PRORSD1P-201ENST00000295112 541 ntBASIC22.48■■□□□ 1.19
PDGFBP01127 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
PDGFBP01127 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFBP01127 KRT18P29-201ENST00000397031 1267 ntBASIC22.48■■□□□ 1.19
PDGFBP01127 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.48■■□□□ 1.19
PDGFBP01127 ITM2C-210ENST00000620962 501 ntBASIC22.48■■□□□ 1.19
PDGFBP01127 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
PDGFBP01127 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC22.47■■□□□ 1.19
PDGFBP01127 RPS2P52-201ENST00000469610 820 ntBASIC22.47■■□□□ 1.19
PDGFBP01127 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.47■■□□□ 1.19
PDGFBP01127 AC133041.1-202ENST00000642053 222 ntBASIC22.47■■□□□ 1.19
PDGFBP01127 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.47■■□□□ 1.19
PDGFBP01127 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
PDGFBP01127 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFBP01127 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC22.46■■□□□ 1.19
PDGFBP01127 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFBP01127 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFBP01127 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
PDGFBP01127 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.46■■□□□ 1.19
PDGFBP01127 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.46■■□□□ 1.19
PDGFBP01127 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFBP01127 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PDGFBP01127 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PDGFBP01127 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC22.45■■□□□ 1.18
PDGFBP01127 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.45■■□□□ 1.18
PDGFBP01127 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC22.45■■□□□ 1.18
PDGFBP01127 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.45■■□□□ 1.18
PDGFBP01127 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms