Protein–RNA interactions for Protein: O60906

SMPD2, Sphingomyelin phosphodiesterase 2, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD2O60906 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SMPD2O60906 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.26■□□□□ 0.67
SMPD2O60906 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.26■□□□□ 0.67
SMPD2O60906 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMPD2O60906 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.26■□□□□ 0.67
SMPD2O60906 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.26■□□□□ 0.67
SMPD2O60906 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMPD2O60906 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMPD2O60906 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMPD2O60906 DUSP8P5-201ENST00000422884 1815 ntBASIC19.25■□□□□ 0.67
SMPD2O60906 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
SMPD2O60906 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMPD2O60906 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.25■□□□□ 0.67
SMPD2O60906 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMPD2O60906 DUSP8P3-201ENST00000399571 1760 ntBASIC19.25■□□□□ 0.67
SMPD2O60906 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.25■□□□□ 0.67
SMPD2O60906 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMPD2O60906 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMPD2O60906 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.25■□□□□ 0.67
SMPD2O60906 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.25■□□□□ 0.67
SMPD2O60906 AC022517.1-201ENST00000592429 346 ntBASIC19.25■□□□□ 0.67
SMPD2O60906 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.25■□□□□ 0.67
SMPD2O60906 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SMPD2O60906 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SMPD2O60906 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMPD2O60906 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.25■□□□□ 0.67
SMPD2O60906 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMPD2O60906 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMPD2O60906 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMPD2O60906 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SMPD2O60906 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.24■□□□□ 0.67
SMPD2O60906 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SMPD2O60906 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMPD2O60906 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMPD2O60906 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMPD2O60906 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMPD2O60906 YBX1P1-201ENST00000445822 960 ntBASIC19.24■□□□□ 0.67
SMPD2O60906 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.24■□□□□ 0.67
SMPD2O60906 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.24■□□□□ 0.67
SMPD2O60906 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SMPD2O60906 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SMPD2O60906 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMPD2O60906 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SMPD2O60906 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.24■□□□□ 0.67
SMPD2O60906 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMPD2O60906 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.24■□□□□ 0.67
SMPD2O60906 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SMPD2O60906 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.23■□□□□ 0.67
SMPD2O60906 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.23■□□□□ 0.67
SMPD2O60906 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.23■□□□□ 0.67
SMPD2O60906 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.23■□□□□ 0.67
SMPD2O60906 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.23■□□□□ 0.67
SMPD2O60906 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.23■□□□□ 0.67
SMPD2O60906 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMPD2O60906 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.23■□□□□ 0.67
SMPD2O60906 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SMPD2O60906 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SMPD2O60906 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
SMPD2O60906 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.22■□□□□ 0.67
SMPD2O60906 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SMPD2O60906 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.22■□□□□ 0.67
SMPD2O60906 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMPD2O60906 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SMPD2O60906 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.22■□□□□ 0.67
SMPD2O60906 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.22■□□□□ 0.67
SMPD2O60906 IKBKGP1-201ENST00000612193 1073 ntBASIC19.22■□□□□ 0.67
SMPD2O60906 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.22■□□□□ 0.67
SMPD2O60906 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMPD2O60906 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.22■□□□□ 0.67
SMPD2O60906 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.22■□□□□ 0.67
SMPD2O60906 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.22■□□□□ 0.67
SMPD2O60906 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMPD2O60906 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.22■□□□□ 0.67
SMPD2O60906 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.21■□□□□ 0.67
SMPD2O60906 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.21■□□□□ 0.67
SMPD2O60906 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.21■□□□□ 0.67
SMPD2O60906 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.21■□□□□ 0.67
SMPD2O60906 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.21■□□□□ 0.67
SMPD2O60906 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SMPD2O60906 pRNA.6-201ENST00000610482 90 ntBASIC19.21■□□□□ 0.67
SMPD2O60906 pRNA.5-201ENST00000612139 90 ntBASIC19.21■□□□□ 0.67
SMPD2O60906 pRNA.11-201ENST00000618423 90 ntBASIC19.21■□□□□ 0.67
SMPD2O60906 pRNA.13-201ENST00000619112 90 ntBASIC19.21■□□□□ 0.67
SMPD2O60906 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMPD2O60906 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms