Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 DUTP3-201ENST00000450025 415 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 CEP164P1-201ENST00000455142 418 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AC008267.1-201ENST00000474858 1069 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 RPL18AP8-201ENST00000486071 528 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 RN7SL67P-201ENST00000492147 296 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 MIR3677-201ENST00000578964 60 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AC012044.1-201ENST00000603431 297 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 KRT18P9-201ENST00000604826 1300 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 TBC1D3J-201ENST00000620719 1426 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 CD27-AS1-209ENST00000545339 1766 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 ALOX5-208ENST00000612635 1945 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 CEACAM20-206ENST00000621342 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 ACOX2-201ENST00000302819 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 ELMOD3-203ENST00000409013 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 TRPC7-203ENST00000502753 2424 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 FOXD2-AS1-201ENST00000445551 2509 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 ZNF606-204ENST00000547828 2680 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 POLL-203ENST00000370162 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 VPS52-218ENST00000482399 3338 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 PRAMENP-201ENST00000337471 3038 ntTSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 TUFT1-202ENST00000368848 3033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 CYP4F11-205ENST00000620614 2908 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 CLDN19-201ENST00000296387 2859 ntTSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 C1QTNF3-202ENST00000382065 2802 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 STRA6-206ENST00000449139 2732 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 CPSF6-201ENST00000266679 2229 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 SLC22A6-202ENST00000377871 2151 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ZNF44-202ENST00000355684 2119 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 GIMAP1-GIMAP5-201ENST00000611999 2148 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 AL391845.2-201ENST00000443930 1954 ntTSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 AC091807.1-201ENST00000418838 1544 ntBASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 P2RY8-201ENST00000381297 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 MIR33B-201ENST00000385104 96 ntBASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 RPL17P11-201ENST00000417593 544 ntBASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 AC134698.3-201ENST00000523880 214 ntBASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 MBP-238ENST00000580402 915 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 MIR4750-201ENST00000584564 56 ntBASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 RAB8B-201ENST00000321437 4943 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ALDH1L1-202ENST00000393431 2797 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 TRPV1-204ENST00000425167 2607 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 LINC00540-203ENST00000631321 2412 ntTSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ZFHX2-AS1-201ENST00000553985 2322 ntTSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 RHOH-221ENST00000615577 2227 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 RHOH-223ENST00000619474 2230 ntAPPRIS P1 TSL 4 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 ATP2A3-203ENST00000359983 3290 ntTSL 5 BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 AL583810.2-201ENST00000556430 3254 ntBASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 PNMA5-203ENST00000439251 3213 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
AMBRA1Q9C0C7 PECR-201ENST00000265322 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
AMBRA1Q9C0C7 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
AMBRA1Q9C0C7 STRAP-202ENST00000419869 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
AMBRA1Q9C0C7 TGOLN2-206ENST00000444342 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
AMBRA1Q9C0C7 C10orf90-201ENST00000284694 3076 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
AMBRA1Q9C0C7 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
AMBRA1Q9C0C7 TRAF5-203ENST00000367004 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
AMBRA1Q9C0C7 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms