RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 NISCHQ9Y2I1 1504 aa26.72■■□□□ 1.87
LINC00540-203ENST00000631321 CCDC180Q9P1Z9 1646 aa22.78■■□□□ 1.24
LINC00540-203ENST00000631321 ZCCHC6Q5VYS8 1495 aaKnown RBP22.63■■□□□ 1.21
LINC00540-203ENST00000631321 SHROOM4Q9ULL8 1493 aa22.51■■□□□ 1.19
LINC00540-203ENST00000631321 SUPT5HO00267 1087 aaKnown RBP22.08■■□□□ 1.12
LINC00540-203ENST00000631321 DCAF1Q9Y4B6 1507 aa22.06■■□□□ 1.12
LINC00540-203ENST00000631321 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
LINC00540-203ENST00000631321 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
LINC00540-203ENST00000631321 MYO15BQ96JP2 1530 aa21.48■■□□□ 1.03
LINC00540-203ENST00000631321 ABCC9O60706 1549 aa21.33■■□□□ 1.01
LINC00540-203ENST00000631321 SCRIBQ14160 1630 aa21.18■□□□□ 0.98
LINC00540-203ENST00000631321 RSF1Q96T23 1441 aaPredicted RBP21.12■□□□□ 0.97
LINC00540-203ENST00000631321 NACADO15069 1562 aa21.06■□□□□ 0.96
LINC00540-203ENST00000631321 HRCP23327 699 aa20.92■□□□□ 0.94
LINC00540-203ENST00000631321 RB1CC1Q8TDY2 1594 aa20.91■□□□□ 0.94
LINC00540-203ENST00000631321 LOC105371045A0A1W2PR82 267 aa20.84■□□□□ 0.93
LINC00540-203ENST00000631321 PCGF6Q9BYE7 350 aa20.79■□□□□ 0.92
LINC00540-203ENST00000631321 CECR2Q9BXF3 1484 aa20.76■□□□□ 0.91
LINC00540-203ENST00000631321 MROH2BQ7Z745 1585 aa20.72■□□□□ 0.91
LINC00540-203ENST00000631321 TRIM41Q8WV44 630 aa20.65■□□□□ 0.9
LINC00540-203ENST00000631321 WIZO95785 1651 aa20.56■□□□□ 0.88
LINC00540-203ENST00000631321 BAZ1AQ9NRL2 1556 aaPredicted RBP20.54■□□□□ 0.88
LINC00540-203ENST00000631321 TRIM26Q12899 539 aaPredicted RBP20.53■□□□□ 0.88
LINC00540-203ENST00000631321 EIF4G1Q04637 1599 aaKnown RBP20.41■□□□□ 0.86
LINC00540-203ENST00000631321 TOP2AP11388 1531 aaKnown RBP20.35■□□□□ 0.85
LINC00540-203ENST00000631321 FAM9AQ8IZU1 332 aaPredicted RBP20.35■□□□□ 0.85
LINC00540-203ENST00000631321 SMARCA4P51532 1647 aa20.33■□□□□ 0.85
LINC00540-203ENST00000631321 PPARGC1BQ86YN6 1023 aaKnown RBP20.32■□□□□ 0.84
LINC00540-203ENST00000631321 UNC13AQ9UPW8 1703 aa20.28■□□□□ 0.84
LINC00540-203ENST00000631321 CCDC88BA6NC98 1476 aa20.21■□□□□ 0.83
LINC00540-203ENST00000631321 SMARCA2P51531 1590 aa20.2■□□□□ 0.82
LINC00540-203ENST00000631321 ZEB1P37275 1124 aaPredicted RBP20.14■□□□□ 0.81
LINC00540-203ENST00000631321 BICRAQ9NZM4 1560 aa20.1■□□□□ 0.81
LINC00540-203ENST00000631321 ABCC8Q09428 1581 aa20.06■□□□□ 0.8
LINC00540-203ENST00000631321 EHMT2Q96KQ7 1210 aa20.05■□□□□ 0.8
LINC00540-203ENST00000631321 PEG3Q9GZU2 1588 aa20.04■□□□□ 0.8
LINC00540-203ENST00000631321 EEA1Q15075 1411 aa19.96■□□□□ 0.79
LINC00540-203ENST00000631321 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
LINC00540-203ENST00000631321 WRNQ14191 1432 aaPredicted RBP eCLIP19.93■□□□□ 0.78
LINC00540-203ENST00000631321 SOGA1O94964 1423 aa19.9■□□□□ 0.78
LINC00540-203ENST00000631321 TNIKQ9UKE5 1360 aa19.88■□□□□ 0.77
LINC00540-203ENST00000631321 CEP162Q5TB80 1403 aa19.84■□□□□ 0.77
LINC00540-203ENST00000631321 ATAD2BQ9ULI0 1458 aa19.82■□□□□ 0.76
LINC00540-203ENST00000631321 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
LINC00540-203ENST00000631321 RUSC2Q8N2Y8 1516 aa19.79■□□□□ 0.76
LINC00540-203ENST00000631321 GOLGA3Q08378 1498 aa19.74■□□□□ 0.75
LINC00540-203ENST00000631321 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
LINC00540-203ENST00000631321 SYNJ1O43426 1573 aa19.7■□□□□ 0.74
LINC00540-203ENST00000631321 KIF21BO75037 1637 aa19.65■□□□□ 0.74
LINC00540-203ENST00000631321 CEP164Q9UPV0 1460 aa19.65■□□□□ 0.74
LINC00540-203ENST00000631321 UBTFP17480 764 aaKnown RBP19.64■□□□□ 0.73
LINC00540-203ENST00000631321 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.59■□□□□ 0.73
LINC00540-203ENST00000631321 CCER1Q8TC90 406 aaPredicted RBP19.57■□□□□ 0.72
LINC00540-203ENST00000631321 TOP2BQ02880 1626 aa19.52■□□□□ 0.72
LINC00540-203ENST00000631321 HMGXB3Q12766 1538 aa19.5■□□□□ 0.71
LINC00540-203ENST00000631321 NCAPD3P42695 1498 aa19.49■□□□□ 0.71
LINC00540-203ENST00000631321 CLIP1P30622 1438 aa19.48■□□□□ 0.71
LINC00540-203ENST00000631321 BIVM-ERCC5R4GMW8 1640 aa19.46■□□□□ 0.71
LINC00540-203ENST00000631321 RAPGEF2Q9Y4G8 1499 aa19.44■□□□□ 0.7
LINC00540-203ENST00000631321 VPS8Q8N3P4 1428 aa19.43■□□□□ 0.7
LINC00540-203ENST00000631321 TTBK1Q5TCY1 1321 aaPredicted RBP19.43■□□□□ 0.7
LINC00540-203ENST00000631321 ERICH3Q5RHP9 1530 aa19.36■□□□□ 0.69
LINC00540-203ENST00000631321 PRXQ9BXM0 1461 aa19.35■□□□□ 0.69
LINC00540-203ENST00000631321 CFTRP13569 1480 aa19.31■□□□□ 0.68
LINC00540-203ENST00000631321 CUX1P39880 1505 aa19.3■□□□□ 0.68
LINC00540-203ENST00000631321 APLP2Q06481 763 aa19.22■□□□□ 0.67
LINC00540-203ENST00000631321 KIF27Q86VH2 1401 aa19.22■□□□□ 0.67
LINC00540-203ENST00000631321 DIEXFQ68CQ4 756 aaKnown RBP19.21■□□□□ 0.67
LINC00540-203ENST00000631321 ARAP1Q96P48 1450 aa19.2■□□□□ 0.66
LINC00540-203ENST00000631321 SCAF1Q9H7N4 1312 aaKnown RBP19.18■□□□□ 0.66
LINC00540-203ENST00000631321 HNRNPUL2Q1KMD3 747 aaKnown RBP19.16■□□□□ 0.66
LINC00540-203ENST00000631321 PRDM2Q13029 1718 aa19.13■□□□□ 0.65
LINC00540-203ENST00000631321 ZNF316A6NFI3 1004 aaPredicted RBP19.12■□□□□ 0.65
LINC00540-203ENST00000631321 RANGAP1P46060 587 aaPredicted RBP19.09■□□□□ 0.65
LINC00540-203ENST00000631321 ACIN1Q9UKV3 1341 aaKnown RBP19.07■□□□□ 0.64
LINC00540-203ENST00000631321 CADPSQ9ULU8 1353 aa19.07■□□□□ 0.64
LINC00540-203ENST00000631321 ARHGAP35Q9NRY4 1499 aa19.03■□□□□ 0.64
LINC00540-203ENST00000631321 IGF1RP08069 1367 aa19.02■□□□□ 0.64
LINC00540-203ENST00000631321 CLSPNQ9HAW4 1339 aa19.01■□□□□ 0.63
LINC00540-203ENST00000631321 RRBP1Q9P2E9 1410 aaKnown RBP19.01■□□□□ 0.63
LINC00540-203ENST00000631321 KANK4Q5T7N3 995 aaPredicted RBP19■□□□□ 0.63
LINC00540-203ENST00000631321 CUX2O14529 1486 aa18.99■□□□□ 0.63
LINC00540-203ENST00000631321 NEUROD1Q13562 356 aa18.99■□□□□ 0.63
LINC00540-203ENST00000631321 CENPBP07199 599 aaPredicted RBP18.96■□□□□ 0.63
LINC00540-203ENST00000631321 FGD5Q6ZNL6 1462 aa18.94■□□□□ 0.62
LINC00540-203ENST00000631321 DHX57Q6P158 1386 aaKnown RBP18.93■□□□□ 0.62
LINC00540-203ENST00000631321 MAP3K1Q13233 1512 aa18.92■□□□□ 0.62
LINC00540-203ENST00000631321 CARMIL1Q5VZK9 1371 aa18.91■□□□□ 0.62
LINC00540-203ENST00000631321 CC2D2AQ9P2K1 1620 aa18.89■□□□□ 0.62
LINC00540-203ENST00000631321 CCNB3Q8WWL7 1395 aa18.88■□□□□ 0.61
LINC00540-203ENST00000631321 PELP1Q8IZL8 1130 aaKnown RBP18.87■□□□□ 0.61
LINC00540-203ENST00000631321 FANCD2Q9BXW9 1451 aa18.85■□□□□ 0.61
LINC00540-203ENST00000631321 TIAM1Q13009 1591 aa18.83■□□□□ 0.6
LINC00540-203ENST00000631321 DNMBPQ6XZF7 1577 aa18.8■□□□□ 0.6
LINC00540-203ENST00000631321 ABCA10Q8WWZ4 1543 aa18.79■□□□□ 0.6
LINC00540-203ENST00000631321 MIER1Q8N108 512 aa18.78■□□□□ 0.6
LINC00540-203ENST00000631321 FHAD1B1AJZ9 1412 aa18.77■□□□□ 0.6
LINC00540-203ENST00000631321 GTF3C3Q9Y5Q9 886 aa18.77■□□□□ 0.6
LINC00540-203ENST00000631321 LRRC9Q6ZRR7 1453 aa18.76■□□□□ 0.59
LINC00540-203ENST00000631321 TOPBP1Q92547 1522 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms