Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 AC139491.6-202ENST00000637171 2077 ntBASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 HMGB1-202ENST00000339872 2319 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 SMTN-222ENST00000612341 3321 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 PTK7-204ENST00000349241 3801 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 CRHR1-206ENST00000398285 2399 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 GDPD5-202ENST00000443276 3106 ntTSL 5 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 CICP19-201ENST00000632944 2357 ntBASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 ARAP1-209ENST00000455638 2683 ntTSL 5 BASIC12.55□□□□□ -0.4
AMBRA1Q9C0C7 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 LINC01134-202ENST00000439488 1940 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ALDH1A2-204ENST00000537372 3700 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 CRBN-215ENST00000639284 2223 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 KRT78-202ENST00000359499 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ALOX5-207ENST00000542434 2390 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 CACNB3-204ENST00000547230 2395 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 CFL1P6-201ENST00000400899 494 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 RN7SL818P-201ENST00000485099 259 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 SAA2-206ENST00000530400 323 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 AC026803.1-201ENST00000569130 274 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 NAA38-204ENST00000575208 529 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 RN7SL725P-201ENST00000606439 259 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 LINC01783-202ENST00000614408 828 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 BX284668.2-205ENST00000619677 828 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 AC006453.1-201ENST00000636037 1257 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 PTN-202ENST00000393083 1599 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 FERMT2-201ENST00000341590 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 PKP4P1-201ENST00000426801 2158 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ACOT11-201ENST00000343744 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 PDXDC2P-206ENST00000534700 1315 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 ENTPD3-203ENST00000445129 1658 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 NAPB-201ENST00000377026 3837 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 EPB42-202ENST00000441366 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 KRT8P31-201ENST00000504812 1408 ntBASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 TMEM147-AS1-205ENST00000590717 3300 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
AMBRA1Q9C0C7 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 HEY2-202ENST00000368365 2461 ntTSL 2 BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 DZIP1L-201ENST00000327532 3493 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 AL031666.1-201ENST00000413818 1809 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 POPDC2-208ENST00000493094 1837 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 ZNF140-202ENST00000355557 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 IQSEC1-204ENST00000613206 3582 ntTSL 2 BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 PAM-204ENST00000348126 3622 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
AMBRA1Q9C0C7 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms