Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CCL19-202ENST00000378800 414 ntTSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 ACTBP14-201ENST00000411655 1089 ntBASIC12.94□□□□□ -0.34
COL28A1Q2UY09 AL627095.1-201ENST00000414775 321 ntBASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CRIP1P2-201ENST00000425396 228 ntBASIC12.94□□□□□ -0.34
COL28A1Q2UY09 YY1P2-201ENST00000438766 948 ntBASIC12.94□□□□□ -0.34
COL28A1Q2UY09 DUX4L31-201ENST00000446466 1136 ntBASIC12.94□□□□□ -0.34
COL28A1Q2UY09 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 MARK2P17-201ENST00000498560 841 ntBASIC12.94□□□□□ -0.34
COL28A1Q2UY09 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 FAM86FP-201ENST00000338711 969 ntBASIC12.93□□□□□ -0.34
COL28A1Q2UY09 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CCND3P1-201ENST00000438347 580 ntBASIC12.93□□□□□ -0.34
COL28A1Q2UY09 PSME2P2-201ENST00000453033 700 ntBASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AC023051.2-201ENST00000541141 460 ntBASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AC010202.1-201ENST00000551181 405 ntBASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CMC2-204ENST00000562713 573 ntTSL 3 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CMC2-209ENST00000565108 399 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 GOLGA8IP-202ENST00000611635 2100 ntBASIC12.93□□□□□ -0.34
COL28A1Q2UY09 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms