Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.94■□□□□ 0.78
LSM3P62310 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.94■□□□□ 0.78
LSM3P62310 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
LSM3P62310 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LSM3P62310 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.93■□□□□ 0.78
LSM3P62310 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM3P62310 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
LSM3P62310 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM3P62310 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
LSM3P62310 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
LSM3P62310 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.93■□□□□ 0.78
LSM3P62310 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.93■□□□□ 0.78
LSM3P62310 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM3P62310 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LSM3P62310 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM3P62310 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM3P62310 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM3P62310 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.92■□□□□ 0.78
LSM3P62310 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
LSM3P62310 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
LSM3P62310 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LSM3P62310 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
LSM3P62310 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
LSM3P62310 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.92■□□□□ 0.78
LSM3P62310 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.92■□□□□ 0.78
LSM3P62310 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
LSM3P62310 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM3P62310 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LSM3P62310 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LSM3P62310 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LSM3P62310 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.91■□□□□ 0.78
LSM3P62310 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM3P62310 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.91■□□□□ 0.78
LSM3P62310 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.9■□□□□ 0.78
LSM3P62310 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.9■□□□□ 0.78
LSM3P62310 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LSM3P62310 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.9■□□□□ 0.78
LSM3P62310 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.9■□□□□ 0.78
LSM3P62310 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM3P62310 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
LSM3P62310 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM3P62310 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.89■□□□□ 0.77
LSM3P62310 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM3P62310 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM3P62310 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LSM3P62310 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM3P62310 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.89■□□□□ 0.77
LSM3P62310 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC19.89■□□□□ 0.77
LSM3P62310 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM3P62310 SMPD5-203ENST00000639008 1464 ntBASIC19.89■□□□□ 0.77
LSM3P62310 AL157384.1-201ENST00000445995 2473 ntBASIC19.88■□□□□ 0.77
LSM3P62310 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
LSM3P62310 AC010542.4-201ENST00000563151 1910 ntBASIC19.88■□□□□ 0.77
LSM3P62310 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM3P62310 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM3P62310 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
LSM3P62310 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM3P62310 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC19.88■□□□□ 0.77
LSM3P62310 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM3P62310 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM3P62310 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
LSM3P62310 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms