Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SUMO3P55854 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.1■□□□□ 0.81
SUMO3P55854 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SUMO3P55854 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.1■□□□□ 0.81
SUMO3P55854 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SUMO3P55854 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.09■□□□□ 0.81
SUMO3P55854 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
SUMO3P55854 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SUMO3P55854 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.09■□□□□ 0.81
SUMO3P55854 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.09■□□□□ 0.81
SUMO3P55854 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SUMO3P55854 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.09■□□□□ 0.81
SUMO3P55854 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
SUMO3P55854 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SUMO3P55854 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SUMO3P55854 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
SUMO3P55854 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SUMO3P55854 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SUMO3P55854 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SUMO3P55854 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.08■□□□□ 0.81
SUMO3P55854 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SUMO3P55854 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SUMO3P55854 OR2I1P-207ENST00000453522 948 ntBASIC20.08■□□□□ 0.81
SUMO3P55854 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SUMO3P55854 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SUMO3P55854 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SUMO3P55854 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.08■□□□□ 0.8
SUMO3P55854 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.08■□□□□ 0.8
SUMO3P55854 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SUMO3P55854 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SUMO3P55854 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SUMO3P55854 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.07■□□□□ 0.8
SUMO3P55854 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.07■□□□□ 0.8
SUMO3P55854 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.07■□□□□ 0.8
SUMO3P55854 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.07■□□□□ 0.8
SUMO3P55854 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SUMO3P55854 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.07■□□□□ 0.8
SUMO3P55854 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.07■□□□□ 0.8
SUMO3P55854 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SUMO3P55854 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SUMO3P55854 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SUMO3P55854 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SUMO3P55854 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.06■□□□□ 0.8
SUMO3P55854 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
SUMO3P55854 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SUMO3P55854 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SUMO3P55854 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SUMO3P55854 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SUMO3P55854 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.06■□□□□ 0.8
SUMO3P55854 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.06■□□□□ 0.8
SUMO3P55854 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.06■□□□□ 0.8
SUMO3P55854 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.06■□□□□ 0.8
SUMO3P55854 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.06■□□□□ 0.8
SUMO3P55854 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SUMO3P55854 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.06■□□□□ 0.8
SUMO3P55854 AC068473.5-201ENST00000616428 2072 ntBASIC20.06■□□□□ 0.8
SUMO3P55854 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.05■□□□□ 0.8
SUMO3P55854 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.05■□□□□ 0.8
SUMO3P55854 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SUMO3P55854 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SUMO3P55854 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SUMO3P55854 UNC93B3-201ENST00000308076 687 ntBASIC20.05■□□□□ 0.8
SUMO3P55854 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SUMO3P55854 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.05■□□□□ 0.8
SUMO3P55854 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SUMO3P55854 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SUMO3P55854 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.05■□□□□ 0.8
SUMO3P55854 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SUMO3P55854 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.05■□□□□ 0.8
SUMO3P55854 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SUMO3P55854 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.05■□□□□ 0.8
SUMO3P55854 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SUMO3P55854 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SUMO3P55854 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SUMO3P55854 ESRRAP2-201ENST00000418437 1549 ntBASIC20.04■□□□□ 0.8
SUMO3P55854 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SUMO3P55854 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.04■□□□□ 0.8
SUMO3P55854 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SUMO3P55854 AL136162.1-201ENST00000607711 1078 ntBASIC20.04■□□□□ 0.8
SUMO3P55854 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SUMO3P55854 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.04■□□□□ 0.8
SUMO3P55854 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.04■□□□□ 0.8
SUMO3P55854 AC012676.1-201ENST00000574705 1949 ntBASIC20.04■□□□□ 0.8
SUMO3P55854 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.03■□□□□ 0.8
SUMO3P55854 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SUMO3P55854 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SUMO3P55854 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.03■□□□□ 0.8
SUMO3P55854 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SUMO3P55854 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SUMO3P55854 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.03■□□□□ 0.8
SUMO3P55854 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms