Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC4P09017 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC4P09017 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC4P09017 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC4P09017 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.77■■□□□ 1.08
HOXC4P09017 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.77■■□□□ 1.08
HOXC4P09017 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.77■■□□□ 1.08
HOXC4P09017 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC4P09017 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC4P09017 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC4P09017 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.76■■□□□ 1.07
HOXC4P09017 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HOXC4P09017 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HOXC4P09017 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HOXC4P09017 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.76■■□□□ 1.07
HOXC4P09017 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
HOXC4P09017 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.76■■□□□ 1.07
HOXC4P09017 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.76■■□□□ 1.07
HOXC4P09017 AL354811.1-201ENST00000610286 706 ntBASIC21.76■■□□□ 1.07
HOXC4P09017 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HOXC4P09017 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HOXC4P09017 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HOXC4P09017 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
HOXC4P09017 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HOXC4P09017 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.75■■□□□ 1.07
HOXC4P09017 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 AL031602.1-201ENST00000633169 911 ntBASIC21.75■■□□□ 1.07
HOXC4P09017 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.75■■□□□ 1.07
HOXC4P09017 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.75■■□□□ 1.07
HOXC4P09017 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HOXC4P09017 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC4P09017 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
HOXC4P09017 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
HOXC4P09017 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC4P09017 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.74■■□□□ 1.07
HOXC4P09017 AC027612.3-201ENST00000413684 1047 ntBASIC21.74■■□□□ 1.07
HOXC4P09017 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC4P09017 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.74■■□□□ 1.07
HOXC4P09017 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.74■■□□□ 1.07
HOXC4P09017 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.74■■□□□ 1.07
HOXC4P09017 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
HOXC4P09017 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.74■■□□□ 1.07
HOXC4P09017 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.74■■□□□ 1.07
HOXC4P09017 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.73■■□□□ 1.07
HOXC4P09017 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.73■■□□□ 1.07
HOXC4P09017 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.73■■□□□ 1.07
HOXC4P09017 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC4P09017 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.73■■□□□ 1.07
HOXC4P09017 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.73■■□□□ 1.07
HOXC4P09017 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC4P09017 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC4P09017 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC4P09017 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC4P09017 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.72■■□□□ 1.07
HOXC4P09017 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.72■■□□□ 1.07
HOXC4P09017 AC012414.1-201ENST00000556676 535 ntBASIC21.72■■□□□ 1.07
HOXC4P09017 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.72■■□□□ 1.07
HOXC4P09017 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.71■■□□□ 1.07
HOXC4P09017 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.71■■□□□ 1.07
HOXC4P09017 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.71■■□□□ 1.07
HOXC4P09017 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 AC123595.1-201ENST00000440769 1046 ntBASIC21.71■■□□□ 1.07
HOXC4P09017 YBX1P1-201ENST00000445822 960 ntBASIC21.71■■□□□ 1.07
HOXC4P09017 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.71■■□□□ 1.07
HOXC4P09017 AC087623.3-201ENST00000607047 1098 ntBASIC21.71■■□□□ 1.07
HOXC4P09017 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.71■■□□□ 1.07
HOXC4P09017 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
HOXC4P09017 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.71■■□□□ 1.07
HOXC4P09017 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC4P09017 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.7■■□□□ 1.06
HOXC4P09017 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.7■■□□□ 1.06
HOXC4P09017 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HOXC4P09017 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.7■■□□□ 1.06
HOXC4P09017 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HOXC4P09017 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
HOXC4P09017 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HOXC4P09017 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms