Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.93■□□□□ 0.78
SSX4O60224 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.93■□□□□ 0.78
SSX4O60224 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.93■□□□□ 0.78
SSX4O60224 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.93■□□□□ 0.78
SSX4O60224 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.93■□□□□ 0.78
SSX4O60224 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SSX4O60224 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.93■□□□□ 0.78
SSX4O60224 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX4O60224 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SSX4O60224 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SSX4O60224 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SSX4O60224 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX4O60224 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.92■□□□□ 0.78
SSX4O60224 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX4O60224 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.92■□□□□ 0.78
SSX4O60224 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.92■□□□□ 0.78
SSX4O60224 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SSX4O60224 AC131281.2-201ENST00000520478 145 ntBASIC19.92■□□□□ 0.78
SSX4O60224 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.92■□□□□ 0.78
SSX4O60224 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.92■□□□□ 0.78
SSX4O60224 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.92■□□□□ 0.78
SSX4O60224 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX4O60224 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX4O60224 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.92■□□□□ 0.78
SSX4O60224 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SSX4O60224 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SSX4O60224 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.92■□□□□ 0.78
SSX4O60224 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.91■□□□□ 0.78
SSX4O60224 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SSX4O60224 ANOS2P-203ENST00000472227 1816 ntBASIC19.91■□□□□ 0.78
SSX4O60224 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 MIR935-201ENST00000401179 91 ntBASIC19.91■□□□□ 0.78
SSX4O60224 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SSX4O60224 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.91■□□□□ 0.78
SSX4O60224 MIR6724-1-201ENST00000616420 92 ntBASIC19.91■□□□□ 0.78
SSX4O60224 MIR6724-2-201ENST00000616483 92 ntBASIC19.91■□□□□ 0.78
SSX4O60224 MIR6724-4-201ENST00000617390 92 ntBASIC19.91■□□□□ 0.78
SSX4O60224 MIR6724-3-201ENST00000622482 92 ntBASIC19.91■□□□□ 0.78
SSX4O60224 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.91■□□□□ 0.78
SSX4O60224 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.91■□□□□ 0.78
SSX4O60224 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SSX4O60224 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SSX4O60224 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SSX4O60224 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SSX4O60224 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SSX4O60224 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.9■□□□□ 0.78
SSX4O60224 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.9■□□□□ 0.78
SSX4O60224 AL136116.3-201ENST00000402907 1138 ntBASIC19.9■□□□□ 0.78
SSX4O60224 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
SSX4O60224 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.9■□□□□ 0.78
SSX4O60224 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.9■□□□□ 0.78
SSX4O60224 AL117332.1-201ENST00000622628 974 ntBASIC19.9■□□□□ 0.78
SSX4O60224 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SSX4O60224 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.9■□□□□ 0.78
SSX4O60224 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SSX4O60224 HLA-L-211ENST00000482052 1765 ntBASIC19.9■□□□□ 0.78
SSX4O60224 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SSX4O60224 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SSX4O60224 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SSX4O60224 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SSX4O60224 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SSX4O60224 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SSX4O60224 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.89■□□□□ 0.77
SSX4O60224 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.89■□□□□ 0.77
SSX4O60224 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.89■□□□□ 0.77
SSX4O60224 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SSX4O60224 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.89■□□□□ 0.77
SSX4O60224 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.89■□□□□ 0.77
SSX4O60224 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.88■□□□□ 0.77
SSX4O60224 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SSX4O60224 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SSX4O60224 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.88■□□□□ 0.77
SSX4O60224 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms