Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB3O15347 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HMGB3O15347 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 RNF166-209ENST00000567844 633 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB3O15347 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
HMGB3O15347 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HMGB3O15347 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB3O15347 SMPD5-203ENST00000639008 1464 ntBASIC17.81■□□□□ 0.44
HMGB3O15347 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HMGB3O15347 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB3O15347 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB3O15347 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB3O15347 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB3O15347 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HMGB3O15347 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB3O15347 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB3O15347 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.8■□□□□ 0.44
HMGB3O15347 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB3O15347 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGB3O15347 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGB3O15347 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
HMGB3O15347 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGB3O15347 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
HMGB3O15347 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGB3O15347 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGB3O15347 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HMGB3O15347 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGB3O15347 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB3O15347 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB3O15347 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 CR559946.2-201ENST00000623684 991 ntBASIC17.78■□□□□ 0.44
HMGB3O15347 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGB3O15347 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB3O15347 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB3O15347 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGB3O15347 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
HMGB3O15347 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB3O15347 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGB3O15347 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB3O15347 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB3O15347 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB3O15347 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB3O15347 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB3O15347 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HMGB3O15347 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HMGB3O15347 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB3O15347 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB3O15347 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGB3O15347 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB3O15347 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HMGB3O15347 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB3O15347 AGPS-202ENST00000409888 815 ntTSL 4 BASIC17.75■□□□□ 0.43
HMGB3O15347 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.75■□□□□ 0.43
HMGB3O15347 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB3O15347 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB3O15347 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB3O15347 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
HMGB3O15347 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB3O15347 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB3O15347 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms