Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOXO15266 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOXO15266 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOXO15266 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHOXO15266 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOXO15266 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOXO15266 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC18.78■□□□□ 0.6
SHOXO15266 ABHD17AP5-201ENST00000580133 923 ntBASIC18.78■□□□□ 0.6
SHOXO15266 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.78■□□□□ 0.6
SHOXO15266 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SHOXO15266 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOXO15266 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.78■□□□□ 0.6
SHOXO15266 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOXO15266 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SHOXO15266 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOXO15266 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOXO15266 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.77■□□□□ 0.6
SHOXO15266 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOXO15266 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.77■□□□□ 0.6
SHOXO15266 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOXO15266 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.77■□□□□ 0.6
SHOXO15266 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOXO15266 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHOXO15266 AL592295.1-201ENST00000400984 884 ntBASIC18.77■□□□□ 0.6
SHOXO15266 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.77■□□□□ 0.6
SHOXO15266 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOXO15266 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.77■□□□□ 0.59
SHOXO15266 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SHOXO15266 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOXO15266 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOXO15266 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.76■□□□□ 0.59
SHOXO15266 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
SHOXO15266 KRT18P60-201ENST00000312876 1297 ntBASIC18.76■□□□□ 0.59
SHOXO15266 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOXO15266 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOXO15266 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.76■□□□□ 0.59
SHOXO15266 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.76■□□□□ 0.59
SHOXO15266 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOXO15266 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOXO15266 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SHOXO15266 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.75■□□□□ 0.59
SHOXO15266 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.75■□□□□ 0.59
SHOXO15266 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
SHOXO15266 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOXO15266 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SHOXO15266 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOXO15266 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOXO15266 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOXO15266 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHOXO15266 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SHOXO15266 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.74■□□□□ 0.59
SHOXO15266 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOXO15266 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.74■□□□□ 0.59
SHOXO15266 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOXO15266 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOXO15266 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHOXO15266 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
SHOXO15266 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOXO15266 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOXO15266 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SHOXO15266 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOXO15266 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOXO15266 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOXO15266 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.73■□□□□ 0.59
SHOXO15266 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOXO15266 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
SHOXO15266 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOXO15266 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.73■□□□□ 0.59
SHOXO15266 AC090877.2-201ENST00000558441 1738 ntBASIC18.73■□□□□ 0.59
SHOXO15266 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.73■□□□□ 0.59
SHOXO15266 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.73■□□□□ 0.59
SHOXO15266 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.73■□□□□ 0.59
SHOXO15266 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.72■□□□□ 0.59
SHOXO15266 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SHOXO15266 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.72■□□□□ 0.59
SHOXO15266 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHOXO15266 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 AC139795.1-202ENST00000500444 432 ntBASIC18.72■□□□□ 0.59
SHOXO15266 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.72■□□□□ 0.59
SHOXO15266 NTF6A-201ENST00000591175 560 ntBASIC18.72■□□□□ 0.59
SHOXO15266 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.72■□□□□ 0.59
SHOXO15266 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SHOXO15266 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOXO15266 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.71■□□□□ 0.59
SHOXO15266 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOXO15266 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms