Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GRAMD4P6-201ENST00000556999 244 ntBASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC091691.1-201ENST00000583587 1018 ntBASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC113385.2-201ENST00000614465 762 ntBASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AL590824.1-201ENST00000403828 1349 ntBASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC106785.2-201ENST00000564385 1319 ntBASIC13.01□□□□□ -0.33
COL28A1Q2UY09 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC004241.5-201ENST00000623870 2448 ntBASIC13.01□□□□□ -0.33
COL28A1Q2UY09 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL28A1Q2UY09 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL28A1Q2UY09 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL28A1Q2UY09 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC13□□□□□ -0.33
COL28A1Q2UY09 AC073210.1-201ENST00000414799 232 ntBASIC13□□□□□ -0.33
COL28A1Q2UY09 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 HNRNPA1P59-201ENST00000430583 918 ntBASIC13□□□□□ -0.33
COL28A1Q2UY09 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC13□□□□□ -0.33
COL28A1Q2UY09 AL359219.1-201ENST00000556311 934 ntBASIC13□□□□□ -0.33
COL28A1Q2UY09 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC13□□□□□ -0.33
COL28A1Q2UY09 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL28A1Q2UY09 EMP3-204ENST00000596315 761 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC13□□□□□ -0.33
COL28A1Q2UY09 PRR20FP-201ENST00000603320 180 ntBASIC13□□□□□ -0.33
COL28A1Q2UY09 AC106782.5-201ENST00000616011 337 ntBASIC13□□□□□ -0.33
COL28A1Q2UY09 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC13□□□□□ -0.33
COL28A1Q2UY09 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC13□□□□□ -0.33
COL28A1Q2UY09 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC13□□□□□ -0.33
COL28A1Q2UY09 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL28A1Q2UY09 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
COL28A1Q2UY09 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL28A1Q2UY09 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
COL28A1Q2UY09 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms