Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 GOLGA2P5-201ENST00000266746 2395 ntBASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 POM121L4P-202ENST00000427789 1891 ntBASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC13.59□□□□□ -0.23
LYSMD3Q7Z3D4 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC13.58□□□□□ -0.23
LYSMD3Q7Z3D4 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
LYSMD3Q7Z3D4 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
LYSMD3Q7Z3D4 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
LYSMD3Q7Z3D4 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AC026271.4-201ENST00000578214 1833 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 BAK1P1-201ENST00000317045 636 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AL357563.1-201ENST00000404728 395 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 RPL29P2-202ENST00000498671 657 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AC093826.1-201ENST00000508655 993 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 KRT18P37-201ENST00000520711 1282 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AC013553.1-201ENST00000560906 267 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CES1P2-201ENST00000566467 1242 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 TRMT112P3-201ENST00000580149 358 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 AC004899.2-201ENST00000622993 3860 ntBASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LYSMD3Q7Z3D4 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 CFL1P6-201ENST00000400899 494 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms