Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 RAB6A-201ENST00000310653 3389 ntAPPRIS P5 TSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 PLAT-202ENST00000352041 2516 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 ABL2-210ENST00000511413 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 CCDC149-208ENST00000635206 2362 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 DFFB-201ENST00000338895 3105 ntTSL 2 BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 AC006144.1-201ENST00000424220 1600 ntBASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
AMBRA1Q9C0C7 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 P2RX1-201ENST00000225538 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 HCN3-201ENST00000368358 3718 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 CORO7-PAM16-202ENST00000572467 3284 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 ANKRA2-201ENST00000296785 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 ECM1-202ENST00000369047 2070 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 ZNF502-203ENST00000436624 2314 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 MAX-212ENST00000555932 1673 ntTSL 5 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 F2RL3-201ENST00000248076 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 GGTA1P-205ENST00000495328 3478 ntTSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 PHYHIP-201ENST00000321613 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 LGR6-203ENST00000367278 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 RN7SL11P-201ENST00000471305 293 ntBASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 COQ10BP2-201ENST00000513804 724 ntBASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 AC090857.1-201ENST00000527400 390 ntBASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 AL353726.2-201ENST00000623259 884 ntBASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 TRHDE-AS1-202ENST00000435350 2966 ntTSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 AL731571.1-201ENST00000617058 5428 ntBASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
AMBRA1Q9C0C7 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC12.65□□□□□ -0.39
AMBRA1Q9C0C7 ELMOD3-202ENST00000393852 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
AMBRA1Q9C0C7 CICP2-201ENST00000420675 2328 ntBASIC12.65□□□□□ -0.39
AMBRA1Q9C0C7 ZNF25-201ENST00000302609 4139 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 FAM105A-201ENST00000274217 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 CELF4-218ENST00000591287 3757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 POM121L4P-202ENST00000427789 1891 ntBASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 HTR2C-203ENST00000371951 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 NME4-203ENST00000397722 1232 ntTSL 2 BASIC12.64□□□□□ -0.39
AMBRA1Q9C0C7 AC073869.2-201ENST00000417338 1026 ntBASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms