Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 HNRNPABP1-201ENST00000406003 734 ntBASIC16.51■□□□□ 0.23
RC3H1Q5TC82 AL353803.1-201ENST00000439014 800 ntTSL 2 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 FTLP16-201ENST00000446400 513 ntBASIC16.51■□□□□ 0.23
RC3H1Q5TC82 AC046143.1-201ENST00000447139 972 ntTSL 2 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 RN7SL340P-201ENST00000470792 296 ntBASIC16.51■□□□□ 0.23
RC3H1Q5TC82 AL136360.2-201ENST00000502636 581 ntTSL 4 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 SPTY2D1-AS1-202ENST00000511927 573 ntAPPRIS ALT2 TSL 4 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 CNOT8-217ENST00000521450 1158 ntTSL 2 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 PSMD7-205ENST00000568615 931 ntTSL 2 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 ELP5-210ENST00000573657 687 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 KRT16P4-202ENST00000580052 362 ntTSL 3 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 AC090616.6-202ENST00000583601 1088 ntBASIC16.51■□□□□ 0.23
RC3H1Q5TC82 AC068987.3-201ENST00000637934 1195 ntTSL 5 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RC3H1Q5TC82 FAM95B1-211ENST00000592053 1541 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AL669942.1-203ENST00000610972 1541 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 DTX2P1-201ENST00000425797 1633 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AP000897.1-201ENST00000584036 1613 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 OR4C46-201ENST00000328188 930 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 TPT1-203ENST00000379056 1101 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 GNRH2-203ENST00000380346 353 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 ATP5G1P7-201ENST00000444398 400 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AC092944.1-204ENST00000475102 384 ntTSL 5 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 CDK2AP2P2-201ENST00000478512 367 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AC025178.1-201ENST00000503441 834 ntTSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 SLIRP-209ENST00000557342 408 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 HP-215ENST00000569639 568 ntTSL 4 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 RN7SL750P-201ENST00000582814 238 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AP002414.5-201ENST00000591853 258 ntTSL 4 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AC079331.1-201ENST00000623200 1200 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AC091905.3-201ENST00000624959 234 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AL731555.1-201ENST00000634547 1259 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 EFNA1-201ENST00000368406 1444 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 LINGO1-AS1-201ENST00000558691 1720 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 MEFV-209ENST00000541159 1888 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AL139424.2-202ENST00000641335 1369 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 AC007191.1-201ENST00000623179 2995 ntBASIC16.5■□□□□ 0.23
RC3H1Q5TC82 LINC01115-202ENST00000621134 1519 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 STK3-218ENST00000617590 2485 ntTSL 5 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 DNPEP-220ENST00000523282 1662 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RC3H1Q5TC82 PABPC1P2-201ENST00000471997 1805 ntBASIC16.49■□□□□ 0.23
RC3H1Q5TC82 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 PECR-201ENST00000265322 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 SPACA5-201ENST00000304355 648 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 LCE2D-201ENST00000368784 609 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 PLPP4-201ENST00000369073 1135 ntTSL 5 BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 CRYBB2-201ENST00000398215 886 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RC3H1Q5TC82 AL021407.3-201ENST00000407522 486 ntBASIC16.49■□□□□ 0.23
RC3H1Q5TC82 AC010997.3-201ENST00000418818 502 ntTSL 3 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms