Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC104590.1-202ENST00000558368 1921 ntBASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 ANKRD20A7P-201ENST00000402318 2414 ntBASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 CTAGE10P-201ENST00000318353 2408 ntBASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 HLA-DMA-202ENST00000395303 1007 ntBASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 AC011471.3-201ENST00000623576 402 ntBASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 GBAP1-208ENST00000566701 1546 ntBASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 ACOX2-201ENST00000302819 2426 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHROOM3Q8TF72 C9orf170-201ENST00000623052 3239 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 SERF2-204ENST00000402131 586 ntTSL 2 BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 ALG1L7P-201ENST00000502317 768 ntBASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 AP001120.3-201ENST00000585729 489 ntBASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 AP001462.1-201ENST00000594089 452 ntBASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 NECTIN2-201ENST00000252483 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHROOM3Q8TF72 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms