Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 GH1-203ENST00000351388 685 ntTSL 2 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 PPP1R2P4-201ENST00000424051 595 ntBASIC13.09□□□□□ -0.31
COL28A1Q2UY09 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AC093106.1-201ENST00000437271 352 ntBASIC13.09□□□□□ -0.31
COL28A1Q2UY09 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AC099328.1-201ENST00000498809 1030 ntBASIC13.09□□□□□ -0.31
COL28A1Q2UY09 GOLGA2P8-201ENST00000505201 779 ntBASIC13.09□□□□□ -0.31
COL28A1Q2UY09 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 TPST2P1-201ENST00000564073 1102 ntBASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AC090643.2-201ENST00000623442 2029 ntBASIC13.09□□□□□ -0.31
COL28A1Q2UY09 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC13.08□□□□□ -0.31
COL28A1Q2UY09 LILRP2-202ENST00000413572 1383 ntBASIC13.08□□□□□ -0.31
COL28A1Q2UY09 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
COL28A1Q2UY09 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
COL28A1Q2UY09 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 BEND3P3-201ENST00000611030 2440 ntBASIC13.08□□□□□ -0.32
COL28A1Q2UY09 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 RN7SL556P-201ENST00000582856 298 ntBASIC13.08□□□□□ -0.32
COL28A1Q2UY09 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 AC112220.4-201ENST00000604982 1263 ntBASIC13.08□□□□□ -0.32
COL28A1Q2UY09 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC13.08□□□□□ -0.32
COL28A1Q2UY09 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 LINC02486-201ENST00000604157 3000 ntBASIC13.08□□□□□ -0.32
COL28A1Q2UY09 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 RPL4P6-201ENST00000438116 1304 ntBASIC13.08□□□□□ -0.32
COL28A1Q2UY09 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.08□□□□□ -0.32
COL28A1Q2UY09 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms