Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 MIR557-201ENST00000385239 98 ntBASIC13.29□□□□□ -0.28
PCNAP12004 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC13.29□□□□□ -0.28
PCNAP12004 TSACC-208ENST00000481479 741 ntTSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC13.29□□□□□ -0.28
PCNAP12004 RN7SL574P-201ENST00000581512 297 ntBASIC13.29□□□□□ -0.28
PCNAP12004 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC13.29□□□□□ -0.28
PCNAP12004 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 GOLGA8UP-201ENST00000527159 1755 ntBASIC13.29□□□□□ -0.28
PCNAP12004 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 AC010336.1-201ENST00000539278 4739 ntBASIC13.29□□□□□ -0.28
PCNAP12004 GOLGA2P5-201ENST00000266746 2395 ntBASIC13.29□□□□□ -0.28
PCNAP12004 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
PCNAP12004 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
PCNAP12004 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 RPL3P2-204ENST00000413027 1203 ntBASIC13.28□□□□□ -0.28
PCNAP12004 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.28□□□□□ -0.28
PCNAP12004 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 GRPEL2P1-201ENST00000453145 339 ntBASIC13.28□□□□□ -0.28
PCNAP12004 FTH1P22-201ENST00000456305 520 ntBASIC13.28□□□□□ -0.28
PCNAP12004 SCARNA12-201ENST00000459155 270 ntBASIC13.28□□□□□ -0.28
PCNAP12004 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC13.28□□□□□ -0.28
PCNAP12004 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC13.28□□□□□ -0.28
PCNAP12004 AC245884.6-201ENST00000515672 1067 ntBASIC13.28□□□□□ -0.28
PCNAP12004 IGLV3-15-201ENST00000518356 244 ntBASIC13.28□□□□□ -0.28
PCNAP12004 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.28□□□□□ -0.28
PCNAP12004 MIR3619-201ENST00000579667 83 ntBASIC13.28□□□□□ -0.28
PCNAP12004 MIR4326-201ENST00000582203 59 ntBASIC13.28□□□□□ -0.28
PCNAP12004 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
PCNAP12004 AL049840.2-201ENST00000602722 535 ntBASIC13.28□□□□□ -0.28
PCNAP12004 AC009145.4-201ENST00000625119 1294 ntBASIC13.28□□□□□ -0.28
PCNAP12004 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
PCNAP12004 PDXDC2P-206ENST00000534700 1315 ntBASIC13.28□□□□□ -0.28
PCNAP12004 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 PXK-210ENST00000479241 2817 ntTSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PCNAP12004 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
PCNAP12004 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
PCNAP12004 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
PCNAP12004 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC13.27□□□□□ -0.28
PCNAP12004 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 PI4KAP2-201ENST00000360806 2080 ntBASIC13.27□□□□□ -0.28
PCNAP12004 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PCNAP12004 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
PCNAP12004 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.27□□□□□ -0.29
PCNAP12004 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
PCNAP12004 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.27□□□□□ -0.29
PCNAP12004 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC13.27□□□□□ -0.29
PCNAP12004 EEF1DP2-201ENST00000433698 843 ntBASIC13.27□□□□□ -0.29
PCNAP12004 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.27□□□□□ -0.29
PCNAP12004 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC13.27□□□□□ -0.29
PCNAP12004 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC13.27□□□□□ -0.29
PCNAP12004 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms