Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 ZSCAN5DP-201ENST00000600684 1488 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC12.23□□□□□ -0.45
SUMO3P55854 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
SUMO3P55854 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC12.23□□□□□ -0.45
SUMO3P55854 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
SUMO3P55854 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
SUMO3P55854 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC12.23□□□□□ -0.45
SUMO3P55854 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC12.23□□□□□ -0.45
SUMO3P55854 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC12.23□□□□□ -0.45
SUMO3P55854 RPS2P36-201ENST00000456516 831 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 AC008267.1-201ENST00000474858 1069 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC12.23□□□□□ -0.45
SUMO3P55854 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 AL359219.1-201ENST00000556311 934 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC12.23□□□□□ -0.45
SUMO3P55854 TRMT112P3-201ENST00000580149 358 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
SUMO3P55854 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC12.23□□□□□ -0.45
SUMO3P55854 U62317.3-201ENST00000608319 855 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 AC010976.2-201ENST00000609697 852 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC12.23□□□□□ -0.45
SUMO3P55854 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC12.23□□□□□ -0.45
SUMO3P55854 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.23□□□□□ -0.45
SUMO3P55854 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 OS9-218ENST00000551035 2246 ntTSL 2 BASIC12.23□□□□□ -0.45
SUMO3P55854 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC12.23□□□□□ -0.45
SUMO3P55854 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC12.23□□□□□ -0.45
SUMO3P55854 DDC-201ENST00000357936 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 L3MBTL1-202ENST00000373134 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 AC073862.3-201ENST00000624597 1648 ntBASIC12.22□□□□□ -0.45
SUMO3P55854 BEND3P3-201ENST00000611030 2440 ntBASIC12.22□□□□□ -0.45
SUMO3P55854 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC12.22□□□□□ -0.45
SUMO3P55854 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC12.22□□□□□ -0.45
SUMO3P55854 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 AP000437.1-201ENST00000624057 2085 ntBASIC12.22□□□□□ -0.45
SUMO3P55854 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC12.22□□□□□ -0.45
SUMO3P55854 AP002761.4-201ENST00000565433 3361 ntBASIC12.22□□□□□ -0.45
SUMO3P55854 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
SUMO3P55854 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
SUMO3P55854 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
SUMO3P55854 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 BAK1P1-201ENST00000317045 636 ntBASIC12.22□□□□□ -0.45
SUMO3P55854 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC12.22□□□□□ -0.45
SUMO3P55854 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC12.22□□□□□ -0.45
SUMO3P55854 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC12.22□□□□□ -0.45
SUMO3P55854 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC12.22□□□□□ -0.45
SUMO3P55854 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC12.22□□□□□ -0.45
SUMO3P55854 TBC1D3P6-201ENST00000505954 962 ntBASIC12.22□□□□□ -0.45
SUMO3P55854 AC093826.1-201ENST00000508655 993 ntBASIC12.22□□□□□ -0.45
SUMO3P55854 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC12.22□□□□□ -0.45
SUMO3P55854 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SUMO3P55854 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
SUMO3P55854 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC12.22□□□□□ -0.45
SUMO3P55854 AL139823.1-201ENST00000641871 1225 ntBASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms