Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 KRT18P4-201ENST00000422599 1288 ntBASIC12.49□□□□□ -0.41
RFC3P40938 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC12.49□□□□□ -0.41
RFC3P40938 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 AK2P2-201ENST00000439142 405 ntBASIC12.49□□□□□ -0.41
RFC3P40938 GALP-202ENST00000440823 889 ntTSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 BPIFB5P-201ENST00000457066 1099 ntBASIC12.49□□□□□ -0.41
RFC3P40938 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC12.49□□□□□ -0.41
RFC3P40938 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC12.49□□□□□ -0.41
RFC3P40938 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC12.49□□□□□ -0.41
RFC3P40938 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
RFC3P40938 AC126755.5-201ENST00000622756 267 ntBASIC12.49□□□□□ -0.41
RFC3P40938 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
RFC3P40938 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 LINC00638-201ENST00000555578 2518 ntBASIC12.49□□□□□ -0.41
RFC3P40938 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
RFC3P40938 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
RFC3P40938 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 AC041040.1-201ENST00000425197 460 ntBASIC12.48□□□□□ -0.41
RFC3P40938 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 ASS1P2-201ENST00000439895 1223 ntBASIC12.48□□□□□ -0.41
RFC3P40938 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
RFC3P40938 AC063952.3-201ENST00000467756 308 ntBASIC12.48□□□□□ -0.41
RFC3P40938 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC12.48□□□□□ -0.41
RFC3P40938 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC12.48□□□□□ -0.41
RFC3P40938 FAM86B3P-203ENST00000523992 854 ntBASIC12.48□□□□□ -0.41
RFC3P40938 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC12.48□□□□□ -0.41
RFC3P40938 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC12.48□□□□□ -0.41
RFC3P40938 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
RFC3P40938 AL136982.5-201ENST00000605222 294 ntBASIC12.48□□□□□ -0.41
RFC3P40938 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC12.48□□□□□ -0.41
RFC3P40938 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC12.48□□□□□ -0.41
RFC3P40938 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.48□□□□□ -0.41
RFC3P40938 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.48□□□□□ -0.41
RFC3P40938 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 DNM1P41-201ENST00000623634 3350 ntBASIC12.48□□□□□ -0.41
RFC3P40938 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.48□□□□□ -0.41
RFC3P40938 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RFC3P40938 KRT8P24-201ENST00000560290 1559 ntBASIC12.47□□□□□ -0.41
RFC3P40938 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC12.47□□□□□ -0.41
RFC3P40938 AC114271.1-201ENST00000612689 2813 ntBASIC12.47□□□□□ -0.41
RFC3P40938 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RFC3P40938 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.47□□□□□ -0.41
RFC3P40938 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
RFC3P40938 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RFC3P40938 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC12.47□□□□□ -0.41
RFC3P40938 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RFC3P40938 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RFC3P40938 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
RFC3P40938 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
RFC3P40938 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
RFC3P40938 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
RFC3P40938 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms