Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
PCNAP12004 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 TBC1D3J-201ENST00000620719 1426 ntBASIC13.32□□□□□ -0.28
PCNAP12004 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
PCNAP12004 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 MIR1307-201ENST00000408840 149 ntBASIC13.32□□□□□ -0.28
PCNAP12004 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.32□□□□□ -0.28
PCNAP12004 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.32□□□□□ -0.28
PCNAP12004 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.32□□□□□ -0.28
PCNAP12004 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.32□□□□□ -0.28
PCNAP12004 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.32□□□□□ -0.28
PCNAP12004 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC13.32□□□□□ -0.28
PCNAP12004 MIR3940-201ENST00000579148 102 ntBASIC13.32□□□□□ -0.28
PCNAP12004 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
PCNAP12004 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 SIGLEC22P-201ENST00000599104 714 ntBASIC13.32□□□□□ -0.28
PCNAP12004 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.32□□□□□ -0.28
PCNAP12004 AC007718.1-201ENST00000621078 280 ntBASIC13.32□□□□□ -0.28
PCNAP12004 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 CAMKK2-205ENST00000392474 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 GHET1-201ENST00000627071 1906 ntBASIC13.32□□□□□ -0.28
PCNAP12004 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
PCNAP12004 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 AC010970.1-201ENST00000445125 1848 ntBASIC13.32□□□□□ -0.28
PCNAP12004 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PCNAP12004 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC13.32□□□□□ -0.28
PCNAP12004 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC13.32□□□□□ -0.28
PCNAP12004 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
PCNAP12004 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC13.31□□□□□ -0.28
PCNAP12004 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms