Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC01558Q9Y6Z2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC01558Q9Y6Z2 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC01558Q9Y6Z2 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC01558Q9Y6Z2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
LINC01558Q9Y6Z2 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC11.63□□□□□ -0.55
LINC01558Q9Y6Z2 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
LINC01558Q9Y6Z2 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 PODN-203ENST00000395871 2744 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC01558Q9Y6Z2 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC01558Q9Y6Z2 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC01558Q9Y6Z2 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC01558Q9Y6Z2 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms