Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.22■■□□□ 1.15
LYSMD1Q96S90 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
LYSMD1Q96S90 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LYSMD1Q96S90 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.21■■□□□ 1.15
LYSMD1Q96S90 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.21■■□□□ 1.15
LYSMD1Q96S90 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LYSMD1Q96S90 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
LYSMD1Q96S90 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.2■■□□□ 1.15
LYSMD1Q96S90 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 PBX2P1-201ENST00000493219 1291 ntBASIC22.2■■□□□ 1.14
LYSMD1Q96S90 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.2■■□□□ 1.14
LYSMD1Q96S90 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LYSMD1Q96S90 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 MIR4767-201ENST00000582827 78 ntBASIC22.18■■□□□ 1.14
LYSMD1Q96S90 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LYSMD1Q96S90 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 EDA-201ENST00000338901 1233 ntBASIC22.17■■□□□ 1.14
LYSMD1Q96S90 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 OR2I1P-207ENST00000453522 948 ntBASIC22.17■■□□□ 1.14
LYSMD1Q96S90 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.17■■□□□ 1.14
LYSMD1Q96S90 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LYSMD1Q96S90 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.15■■□□□ 1.14
LYSMD1Q96S90 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.15■■□□□ 1.14
LYSMD1Q96S90 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LYSMD1Q96S90 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LYSMD1Q96S90 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.15■■□□□ 1.14
LYSMD1Q96S90 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.15■■□□□ 1.14
LYSMD1Q96S90 AL031432.3-201ENST00000607698 485 ntBASIC22.15■■□□□ 1.14
LYSMD1Q96S90 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
LYSMD1Q96S90 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
LYSMD1Q96S90 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
LYSMD1Q96S90 MIR638-201ENST00000385237 100 ntBASIC22.14■■□□□ 1.13
LYSMD1Q96S90 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.14■■□□□ 1.13
LYSMD1Q96S90 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.14■■□□□ 1.13
LYSMD1Q96S90 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.14■■□□□ 1.13
LYSMD1Q96S90 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
LYSMD1Q96S90 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
LYSMD1Q96S90 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.14■■□□□ 1.13
LYSMD1Q96S90 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms