Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.6□□□□□ -0.392e-22■■□□□ 12.5
CDC40O60508 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC12.16□□□□□ -0.462e-22■■□□□ 12.5
CDC40O60508 SLC26A6-201ENST00000307364 2586 ntTSL 1 (best)11.84□□□□□ -0.512e-22■■□□□ 12.5
CDC40O60508 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.552e-22■■□□□ 12.5
CDC40O60508 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC11.58□□□□□ -0.562e-22■■□□□ 12.5
CDC40O60508 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.582e-22■■□□□ 12.5
CDC40O60508 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.115e-6■■□□□ 12.5
CDC40O60508 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.09■□□□□ 0.015e-6■■□□□ 12.5
CDC40O60508 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.085e-6■■□□□ 12.5
CDC40O60508 COQ8A-207ENST00000485462 2141 ntTSL 1 (best)14.14□□□□□ -0.155e-6■■□□□ 12.5
CDC40O60508 COQ8A-205ENST00000478406 3612 ntTSL 213.3□□□□□ -0.285e-6■■□□□ 12.5
CDC40O60508 SNHG1-216ENST00000541416 996 ntTSL 211.5□□□□□ -0.577e-15■■□□□ 12.5
CDC40O60508 SNHG1-207ENST00000537965 578 ntTSL 54.96□□□□□ -1.627e-15■■□□□ 12.5
CDC40O60508 SNHG1-222ENST00000545308 646 ntTSL 22.72□□□□□ -1.977e-15■■□□□ 12.5
CDC40O60508 SRSF3-203ENST00000477442 1095 ntTSL 512.2□□□□□ -0.462e-14■■□□□ 12.5
CDC40O60508 SRSF3-206ENST00000620242 544 ntTSL 211.81□□□□□ -0.522e-14■■□□□ 12.5
CDC40O60508 SRSF3-201ENST00000339436 1518 ntTSL 211.71□□□□□ -0.532e-14■■□□□ 12.5
CDC40O60508 SRSF3-204ENST00000613941 595 ntTSL 49.96□□□□□ -0.822e-14■■□□□ 12.5
CDC40O60508 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.422e-14■■□□□ 12.5
CDC40O60508 C2orf82-208ENST00000481155 660 ntTSL 320.31■□□□□ 0.842e-6■■□□□ 12.4
CDC40O60508 C2orf82-206ENST00000467665 2782 ntTSL 1 (best)17.45■□□□□ 0.382e-6■■□□□ 12.4
CDC40O60508 SRRM2-220ENST00000574593 1440 ntTSL 314.6□□□□□ -0.079e-8■■□□□ 12.4
CDC40O60508 UBAP2L-206ENST00000428595 1419 ntTSL 1 (best)10.74□□□□□ -0.692e-8■■□□□ 12.4
CDC40O60508 UBAP2L-207ENST00000428931 3988 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.822e-8■■□□□ 12.4
CDC40O60508 UBAP2L-201ENST00000271877 3997 ntTSL 5 BASIC8.91□□□□□ -0.982e-8■■□□□ 12.4
CDC40O60508 UBAP2L-214ENST00000475373 838 ntTSL 28.63□□□□□ -1.032e-8■■□□□ 12.4
CDC40O60508 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC8.11□□□□□ -1.112e-8■■□□□ 12.4
CDC40O60508 UBAP2L-208ENST00000433615 1789 ntTSL 1 (best)8.07□□□□□ -1.122e-8■■□□□ 12.4
CDC40O60508 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC7.82□□□□□ -1.162e-8■■□□□ 12.4
CDC40O60508 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.222e-8■■□□□ 12.4
CDC40O60508 UBAP2L-218ENST00000493867 677 ntTSL 34.88□□□□□ -1.632e-8■■□□□ 12.4
CDC40O60508 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.792e-8■■□□□ 12.4
CDC40O60508 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.075e-7■■□□□ 12.4
CDC40O60508 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.525e-7■■□□□ 12.4
CDC40O60508 SLC17A9-207ENST00000488738 3992 ntTSL 211.78□□□□□ -0.525e-7■■□□□ 12.4
CDC40O60508 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.442e-10■■□□□ 12.4
CDC40O60508 C16orf70-211ENST00000569914 768 ntTSL 316.4■□□□□ 0.222e-10■■□□□ 12.4
CDC40O60508 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.152e-10■■□□□ 12.4
CDC40O60508 C16orf70-210ENST00000569683 905 ntTSL 315.67■□□□□ 0.12e-10■■□□□ 12.4
CDC40O60508 C16orf70-203ENST00000563853 1025 ntTSL 313.27□□□□□ -0.292e-10■■□□□ 12.4
CDC40O60508 C16orf70-205ENST00000566026 525 ntTSL 38.01□□□□□ -1.132e-10■■□□□ 12.4
CDC40O60508 C16orf70-209ENST00000569626 2835 ntTSL 26.38□□□□□ -1.392e-10■■□□□ 12.4
CDC40O60508 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.021e-8■■□□□ 12.4
CDC40O60508 FADS2-213ENST00000523235 5073 ntTSL 214.73□□□□□ -0.051e-8■■□□□ 12.4
CDC40O60508 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.1□□□□□ -0.311e-8■■□□□ 12.4
CDC40O60508 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.52■■□□□ 1.364e-6■■□□□ 12.3
CDC40O60508 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.52■■□□□ 1.364e-6■■□□□ 12.3
CDC40O60508 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.31■■□□□ 1.324e-6■■□□□ 12.3
CDC40O60508 HNRNPD-205ENST00000507010 748 ntTSL 323.1■■□□□ 1.295e-6■■□□□ 12.3
CDC40O60508 VDAC1-204ENST00000425992 703 ntTSL 321.91■■□□□ 1.14e-6■■□□□ 12.3
CDC40O60508 DDX17-206ENST00000467279 712 ntTSL 521.62■■□□□ 1.054e-6■■□□□ 12.3
CDC40O60508 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.054e-6■■□□□ 12.3
CDC40O60508 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.51■■□□□ 1.034e-6■■□□□ 12.3
CDC40O60508 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.974e-6■■□□□ 12.3
CDC40O60508 HNRNPD-204ENST00000503822 607 ntTSL 521.05■□□□□ 0.965e-6■■□□□ 12.3
CDC40O60508 MAZ-211ENST00000567444 635 ntTSL 221.03■□□□□ 0.964e-6■■□□□ 12.3
CDC40O60508 GSE1-204ENST00000411612 872 ntTSL 520■□□□□ 0.794e-6■■□□□ 12.3
CDC40O60508 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.734e-6■■□□□ 12.3
CDC40O60508 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.724e-6■■□□□ 12.3
CDC40O60508 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.29■□□□□ 0.684e-6■■□□□ 12.3
CDC40O60508 HNRNPD-207ENST00000509107 583 ntTSL 519.27■□□□□ 0.685e-6■■□□□ 12.3
CDC40O60508 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.69■□□□□ 0.584e-6■■□□□ 12.3
CDC40O60508 SPATS2L-221ENST00000459656 1901 ntTSL 1 (best)18.61■□□□□ 0.574e-6■■□□□ 12.3
CDC40O60508 MAZ-207ENST00000563012 646 ntTSL 318.39■□□□□ 0.534e-6■■□□□ 12.3
CDC40O60508 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.534e-6■■□□□ 12.3
CDC40O60508 SPATS2L-225ENST00000471533 329 ntTSL 318.12■□□□□ 0.494e-6■■□□□ 12.3
CDC40O60508 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.454e-6■■□□□ 12.3
CDC40O60508 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.444e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.44e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.384e-6■■□□□ 12.3
CDC40O60508 SPATS2L-216ENST00000444012 605 ntTSL 417.19■□□□□ 0.344e-6■■□□□ 12.3
CDC40O60508 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.334e-6■■□□□ 12.3
CDC40O60508 CDKN1A-206ENST00000462537 553 ntTSL 317.08■□□□□ 0.324e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.314e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.314e-6■■□□□ 12.3
CDC40O60508 SPATS2L-212ENST00000428692 541 ntTSL 416.84■□□□□ 0.294e-6■■□□□ 12.3
CDC40O60508 SPATS2L-220ENST00000457757 835 ntTSL 516.84■□□□□ 0.294e-6■■□□□ 12.3
CDC40O60508 BCS1L-209ENST00000430322 1036 ntTSL 516.77■□□□□ 0.284e-6■■□□□ 12.3
CDC40O60508 BCS1L-214ENST00000456050 815 ntTSL 516.77■□□□□ 0.284e-6■■□□□ 12.3
CDC40O60508 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.73■□□□□ 0.274e-6■■□□□ 12.3
CDC40O60508 RPS25-204ENST00000527853 1462 ntTSL 216.67■□□□□ 0.264e-6■■□□□ 12.3
CDC40O60508 CDKN1A-205ENST00000459970 604 ntTSL 516.64■□□□□ 0.254e-6■■□□□ 12.3
CDC40O60508 SPATS2L-211ENST00000423749 771 ntTSL 516.58■□□□□ 0.244e-6■■□□□ 12.3
CDC40O60508 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.24e-6■■□□□ 12.3
CDC40O60508 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.24e-6■■□□□ 12.3
CDC40O60508 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.144e-6■■□□□ 12.3
CDC40O60508 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.144e-6■■□□□ 12.3
CDC40O60508 CDKN1A-207ENST00000478800 616 ntTSL 215.67■□□□□ 0.14e-6■■□□□ 12.3
CDC40O60508 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.14e-6■■□□□ 12.3
CDC40O60508 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.074e-6■■□□□ 12.3
CDC40O60508 FDPS-212ENST00000487002 2017 ntTSL 215.43■□□□□ 0.064e-6■■□□□ 12.3
CDC40O60508 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.044e-6■■□□□ 12.3
CDC40O60508 BCS1L-206ENST00000423377 583 ntTSL 315.15■□□□□ 0.024e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.14■□□□□ 0.014e-6■■□□□ 12.3
CDC40O60508 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 04e-6■■□□□ 12.3
CDC40O60508 ATG4B-225ENST00000494465 2365 ntTSL 515.03■□□□□ -04e-6■■□□□ 12.3
CDC40O60508 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.86□□□□□ -0.034e-6■■□□□ 12.3
CDC40O60508 ATG4B-201ENST00000344376 1566 ntTSL 514.85□□□□□ -0.034e-6■■□□□ 12.3
CDC40O60508 DDX17-203ENST00000403230 2322 ntAPPRIS ALT2 TSL 1 (best)14.8□□□□□ -0.044e-6■■□□□ 12.3
CDC40O60508 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.054e-6■■□□□ 12.3
Retrieved 100 of 5,364 protein–RNA pairs in 47.1 ms