Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.24□□□□□ -0.45
CNOT4O95628 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
CNOT4O95628 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CNOT4O95628 AC073869.1-201ENST00000415574 2762 ntBASIC12.24□□□□□ -0.45
CNOT4O95628 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CNOT4O95628 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 MIR497HG-202ENST00000572453 3838 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
CNOT4O95628 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
CNOT4O95628 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 ABCD1P4-201ENST00000399687 604 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 GGTLC4P-201ENST00000402176 664 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 SNORA50C-201ENST00000408535 133 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 ACTBP14-201ENST00000411655 1089 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 RPL3P2-204ENST00000413027 1203 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 AC005722.1-201ENST00000431878 964 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 RPL35P9-201ENST00000446059 350 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 LYPLA2P1-203ENST00000447689 696 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.23□□□□□ -0.45
CNOT4O95628 REEP5-205ENST00000504247 480 ntTSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC12.23□□□□□ -0.45
CNOT4O95628 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 IGHV1-12-201ENST00000518307 205 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC12.23□□□□□ -0.45
CNOT4O95628 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC12.23□□□□□ -0.45
CNOT4O95628 MIR3180-2-201ENST00000581748 88 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 AC105137.3-201ENST00000617588 984 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
CNOT4O95628 AC079416.2-201ENST00000625035 1193 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 ST5-261ENST00000626808 1071 ntTSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 SNORA50.1-201ENST00000628590 135 ntBASIC12.23□□□□□ -0.45
CNOT4O95628 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
CNOT4O95628 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
CNOT4O95628 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC12.23□□□□□ -0.45
CNOT4O95628 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CNOT4O95628 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC12.22□□□□□ -0.45
CNOT4O95628 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CNOT4O95628 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC12.22□□□□□ -0.45
CNOT4O95628 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CNOT4O95628 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CNOT4O95628 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC12.22□□□□□ -0.45
CNOT4O95628 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 AC090502.4-201ENST00000551714 1386 ntBASIC12.22□□□□□ -0.45
CNOT4O95628 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
CNOT4O95628 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CNOT4O95628 BAK1P1-201ENST00000317045 636 ntBASIC12.22□□□□□ -0.45
CNOT4O95628 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CNOT4O95628 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC12.22□□□□□ -0.45
CNOT4O95628 OR52M2P-201ENST00000414298 959 ntBASIC12.22□□□□□ -0.45
CNOT4O95628 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC12.22□□□□□ -0.45
CNOT4O95628 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC12.22□□□□□ -0.45
CNOT4O95628 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC12.22□□□□□ -0.45
CNOT4O95628 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms