Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LRCH3Q96II8 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC14.8□□□□□ -0.04
LRCH3Q96II8 AC116036.2-201ENST00000607592 462 ntBASIC14.8□□□□□ -0.04
LRCH3Q96II8 AC004908.3-201ENST00000610248 625 ntBASIC14.8□□□□□ -0.04
LRCH3Q96II8 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
LRCH3Q96II8 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 AC015813.5-201ENST00000624641 1514 ntBASIC14.8□□□□□ -0.04
LRCH3Q96II8 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.8□□□□□ -0.04
LRCH3Q96II8 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.8□□□□□ -0.04
LRCH3Q96II8 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC14.8□□□□□ -0.04
LRCH3Q96II8 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRCH3Q96II8 AL928921.2-201ENST00000641325 2442 ntBASIC14.8□□□□□ -0.04
LRCH3Q96II8 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 OR10K2-201ENST00000314902 939 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 NOS2P3-201ENST00000411468 867 ntBASIC14.79□□□□□ -0.04
LRCH3Q96II8 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 NOS2P2-201ENST00000426269 867 ntBASIC14.79□□□□□ -0.04
LRCH3Q96II8 ASLP1-201ENST00000428790 637 ntBASIC14.79□□□□□ -0.04
LRCH3Q96II8 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 PRRX2-AS1-201ENST00000440413 429 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 AC068985.1-201ENST00000463297 703 ntTSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 YBX1P3-201ENST00000468366 909 ntBASIC14.79□□□□□ -0.04
LRCH3Q96II8 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 AC015818.3-201ENST00000583797 589 ntBASIC14.79□□□□□ -0.04
LRCH3Q96II8 AC087289.4-201ENST00000587348 230 ntTSL 3 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 AC136475.7-201ENST00000602949 592 ntBASIC14.79□□□□□ -0.04
LRCH3Q96II8 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 OR2I1P-210ENST00000642037 4691 ntBASIC14.79□□□□□ -0.04
LRCH3Q96II8 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.79□□□□□ -0.04
LRCH3Q96II8 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRCH3Q96II8 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRCH3Q96II8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.78□□□□□ -0.04
LRCH3Q96II8 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LRCH3Q96II8 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LRCH3Q96II8 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRCH3Q96II8 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRCH3Q96II8 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRCH3Q96II8 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
LRCH3Q96II8 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.78□□□□□ -0.04
LRCH3Q96II8 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LRCH3Q96II8 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRCH3Q96II8 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.78□□□□□ -0.04
LRCH3Q96II8 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRCH3Q96II8 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms