Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CAPN8-201ENST00000366872 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AC027020.2-201ENST00000602585 2389 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AL359510.2-201ENST00000624958 2249 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 GUCY2EP-203ENST00000531117 1918 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 AC004554.1-201ENST00000422830 1468 ntBASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 TERF1P3-201ENST00000505638 1227 ntBASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 AC011495.2-201ENST00000600665 360 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 G2E3-202ENST00000438909 2334 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 AC104590.1-202ENST00000558368 1921 ntBASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 PNMA5-203ENST00000439251 3213 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 DPP3-211ENST00000532677 3078 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC28BQ9BUN5 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 TRHDE-AS1-202ENST00000435350 2966 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 GRK7-201ENST00000264952 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 NRADDP-202ENST00000641269 1585 ntBASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 BRD7P5-201ENST00000299197 1822 ntBASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 PRKAB1-206ENST00000541640 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 GALNT15-203ENST00000437509 2416 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 GUCY1B3-202ENST00000502959 2255 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AC023310.1-201ENST00000554836 735 ntBASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 CSTF2-201ENST00000372972 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AL357060.2-202ENST00000606998 1959 ntTSL 2 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 157.1 ms