Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL6A3P12111 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.6□□□□□ -0.23
COL6A3P12111 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 ZNF621-203ENST00000403205 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 SARNP-201ENST00000336133 926 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 RPS8-202ENST00000396651 881 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 AL117329.2-201ENST00000413815 740 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 AC005838.1-201ENST00000430712 233 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 SNHG15-201ENST00000438705 509 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A3P12111 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 MAJIN-204ENST00000530444 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 AL591368.1-201ENST00000437181 1449 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 CICP14-201ENST00000629111 2732 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 TCEAL9-201ENST00000372656 992 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 AL669831.4-201ENST00000447500 872 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A3P12111 CTSLP1-201ENST00000457530 1002 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 MORF4L1-208ENST00000558746 874 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A3P12111 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A3P12111 AC244230.1-201ENST00000623463 498 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A3P12111 FAM25BP-203ENST00000624613 404 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A3P12111 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 TMEM253-201ENST00000418511 1526 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
COL6A3P12111 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 XYLB-203ENST00000427323 1666 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 AL133163.1-201ENST00000459899 949 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 LINC00879-202ENST00000463200 1041 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 AC018620.1-201ENST00000523233 379 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 Metazoa_SRP.198-201ENST00000610617 323 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 KRT31-201ENST00000251645 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 GMPS-201ENST00000295920 2024 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
COL6A3P12111 AF013593.1-201ENST00000458074 1487 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 RN7SKP90-201ENST00000363013 335 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 KCNIP1-202ENST00000377360 1197 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 AC003101.1-201ENST00000412403 459 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A3P12111 LINC01849-201ENST00000414647 517 ntTSL 4 BASIC13.59□□□□□ -0.23
COL6A3P12111 AL365366.1-201ENST00000414898 853 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 HMGA1P1-201ENST00000415560 1062 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 ZNF101-204ENST00000444249 1152 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 RPE-214ENST00000452025 779 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A3P12111 AC005534.1-201ENST00000455709 742 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 RN7SL674P-201ENST00000463397 275 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 KLF3-AS1-205ENST00000507091 642 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A3P12111 HOXA-AS2-205ENST00000518088 509 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A3P12111 NARF-IT1-201ENST00000584012 769 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A3P12111 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A3P12111 CENPP-204ENST00000618653 570 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A3P12111 AC004494.2-201ENST00000623168 830 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 AC093323.3-201ENST00000632627 949 ntBASIC13.59□□□□□ -0.23
COL6A3P12111 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A3P12111 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A3P12111 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A3P12111 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A3P12111 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A3P12111 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC13.58□□□□□ -0.23
COL6A3P12111 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
COL6A3P12111 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.58□□□□□ -0.23
COL6A3P12111 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A3P12111 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A3P12111 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
COL6A3P12111 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL6A3P12111 NXPE4-201ENST00000375478 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 AC004951.2-201ENST00000420754 789 ntBASIC13.58□□□□□ -0.24
COL6A3P12111 AL160270.1-201ENST00000439960 631 ntTSL 5 BASIC13.58□□□□□ -0.24
COL6A3P12111 AL110504.1-201ENST00000557733 889 ntTSL 5 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms