Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 GUSBP5-201ENST00000418136 578 ntBASIC18.01■□□□□ 0.47
FOXA2Q9Y261 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 MTDHP2-201ENST00000601468 714 ntBASIC18.01■□□□□ 0.47
FOXA2Q9Y261 ESRRAP2-201ENST00000418437 1549 ntBASIC18.01■□□□□ 0.47
FOXA2Q9Y261 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA2Q9Y261 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
FOXA2Q9Y261 EP400NL-214ENST00000641289 2402 ntBASIC18■□□□□ 0.47
FOXA2Q9Y261 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18■□□□□ 0.47
FOXA2Q9Y261 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18■□□□□ 0.47
FOXA2Q9Y261 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 LINC00526-201ENST00000581067 1875 ntBASIC18■□□□□ 0.47
FOXA2Q9Y261 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 ECEL1P1-201ENST00000373592 1742 ntBASIC18■□□□□ 0.47
FOXA2Q9Y261 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
FOXA2Q9Y261 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18■□□□□ 0.47
FOXA2Q9Y261 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA2Q9Y261 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC17.99■□□□□ 0.47
FOXA2Q9Y261 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA2Q9Y261 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 MIR6722-201ENST00000617286 78 ntBASIC17.97■□□□□ 0.47
FOXA2Q9Y261 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
FOXA2Q9Y261 AC127496.7-201ENST00000625110 1798 ntBASIC17.96■□□□□ 0.47
FOXA2Q9Y261 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 AC010997.5-201ENST00000609182 354 ntBASIC17.96■□□□□ 0.47
FOXA2Q9Y261 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA2Q9Y261 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 USF2-207ENST00000595068 1612 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 200.6 ms