Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
UBQLN3Q9H347 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.65■□□□□ 0.9
UBQLN3Q9H347 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
UBQLN3Q9H347 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBQLN3Q9H347 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
UBQLN3Q9H347 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
UBQLN3Q9H347 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
UBQLN3Q9H347 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
UBQLN3Q9H347 AC092068.2-201ENST00000590491 1708 ntBASIC20.64■□□□□ 0.9
UBQLN3Q9H347 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.64■□□□□ 0.89
UBQLN3Q9H347 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.63■□□□□ 0.89
UBQLN3Q9H347 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
UBQLN3Q9H347 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBQLN3Q9H347 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBQLN3Q9H347 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
UBQLN3Q9H347 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBQLN3Q9H347 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
UBQLN3Q9H347 DUSP8P3-201ENST00000399571 1760 ntBASIC20.62■□□□□ 0.89
UBQLN3Q9H347 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 AC009102.2-201ENST00000606772 1639 ntBASIC20.61■□□□□ 0.89
UBQLN3Q9H347 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 SRD5A1P1-201ENST00000442297 786 ntBASIC20.61■□□□□ 0.89
UBQLN3Q9H347 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
UBQLN3Q9H347 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.6■□□□□ 0.89
UBQLN3Q9H347 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.6■□□□□ 0.89
UBQLN3Q9H347 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBQLN3Q9H347 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBQLN3Q9H347 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.6■□□□□ 0.89
UBQLN3Q9H347 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 AL139246.5-201ENST00000606645 996 ntBASIC20.59■□□□□ 0.89
UBQLN3Q9H347 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBQLN3Q9H347 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.58■□□□□ 0.89
UBQLN3Q9H347 AC110285.6-201ENST00000617652 491 ntBASIC20.58■□□□□ 0.89
UBQLN3Q9H347 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
UBQLN3Q9H347 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
UBQLN3Q9H347 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 C17orf82-201ENST00000623772 1530 ntBASIC20.57■□□□□ 0.88
UBQLN3Q9H347 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.57■□□□□ 0.88
UBQLN3Q9H347 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms