Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.92■■□□□ 1.42
ZNF560Q96MR9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 SUDS3P1-201ENST00000505831 966 ntBASIC23.91■■□□□ 1.42
ZNF560Q96MR9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 AF213884.3-201ENST00000563833 479 ntBASIC23.91■■□□□ 1.42
ZNF560Q96MR9 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.91■■□□□ 1.42
ZNF560Q96MR9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 AC027682.1-201ENST00000562846 899 ntBASIC23.9■■□□□ 1.42
ZNF560Q96MR9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.9■■□□□ 1.42
ZNF560Q96MR9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF560Q96MR9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF560Q96MR9 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF560Q96MR9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF560Q96MR9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.89■■□□□ 1.42
ZNF560Q96MR9 AL353803.4-201ENST00000565882 1934 ntBASIC23.89■■□□□ 1.42
ZNF560Q96MR9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
ZNF560Q96MR9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
ZNF560Q96MR9 MIR939-201ENST00000401314 82 ntBASIC23.89■■□□□ 1.41
ZNF560Q96MR9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.89■■□□□ 1.41
ZNF560Q96MR9 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.89■■□□□ 1.41
ZNF560Q96MR9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.89■■□□□ 1.41
ZNF560Q96MR9 ANOS2P-203ENST00000472227 1816 ntBASIC23.89■■□□□ 1.41
ZNF560Q96MR9 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZNF560Q96MR9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.88■■□□□ 1.41
ZNF560Q96MR9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
ZNF560Q96MR9 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
ZNF560Q96MR9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZNF560Q96MR9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.88■■□□□ 1.41
ZNF560Q96MR9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.88■■□□□ 1.41
ZNF560Q96MR9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 AC091305.1-201ENST00000479476 895 ntBASIC23.87■■□□□ 1.41
ZNF560Q96MR9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 AC092068.2-201ENST00000590491 1708 ntBASIC23.87■■□□□ 1.41
ZNF560Q96MR9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.87■■□□□ 1.41
ZNF560Q96MR9 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 BX842568.3-201ENST00000418104 571 ntBASIC23.86■■□□□ 1.41
ZNF560Q96MR9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
ZNF560Q96MR9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 AL136967.2-201ENST00000623968 743 ntBASIC23.85■■□□□ 1.41
ZNF560Q96MR9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
ZNF560Q96MR9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
ZNF560Q96MR9 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.84■■□□□ 1.41
ZNF560Q96MR9 RASA4CP-201ENST00000424092 1398 ntBASIC23.84■■□□□ 1.41
ZNF560Q96MR9 AC008764.7-201ENST00000593779 1081 ntBASIC23.84■■□□□ 1.41
ZNF560Q96MR9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.84■■□□□ 1.41
ZNF560Q96MR9 AC233992.3-201ENST00000607491 485 ntBASIC23.84■■□□□ 1.41
ZNF560Q96MR9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
ZNF560Q96MR9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
ZNF560Q96MR9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
ZNF560Q96MR9 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
ZNF560Q96MR9 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
ZNF560Q96MR9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms