Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 AC105233.4-201ENST00000642045 216 ntBASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC44A3Q8N4M1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 FP325331.1-202ENST00000623531 1380 ntBASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 RAP2CP1-201ENST00000605103 478 ntBASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC44A3Q8N4M1 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 KRT18P61-201ENST00000585825 1298 ntBASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.03■■□□□ 1.28
SLC44A3Q8N4M1 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 CDCA4P2-201ENST00000441182 718 ntBASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 DUX4L4-201ENST00000566884 1269 ntBASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SLC44A3Q8N4M1 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 AC016769.1-201ENST00000409132 1010 ntBASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.01■■□□□ 1.27
SLC44A3Q8N4M1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 AC137761.2-201ENST00000561729 223 ntBASIC23■■□□□ 1.27
SLC44A3Q8N4M1 AC145350.3-201ENST00000569033 163 ntBASIC23■■□□□ 1.27
SLC44A3Q8N4M1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 AC073111.5-205ENST00000641717 521 ntBASIC23■■□□□ 1.27
SLC44A3Q8N4M1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
SLC44A3Q8N4M1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.99■■□□□ 1.27
SLC44A3Q8N4M1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms