Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.91■□□□□ 0.62
PDLIM4P50479 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM4P50479 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.91■□□□□ 0.62
PDLIM4P50479 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.91■□□□□ 0.62
PDLIM4P50479 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM4P50479 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM4P50479 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM4P50479 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM4P50479 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM4P50479 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM4P50479 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM4P50479 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PDLIM4P50479 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.9■□□□□ 0.62
PDLIM4P50479 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM4P50479 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.9■□□□□ 0.62
PDLIM4P50479 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM4P50479 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM4P50479 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.9■□□□□ 0.62
PDLIM4P50479 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM4P50479 AC022211.4-201ENST00000625094 2161 ntBASIC18.89■□□□□ 0.62
PDLIM4P50479 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM4P50479 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM4P50479 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.89■□□□□ 0.61
PDLIM4P50479 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.89■□□□□ 0.61
PDLIM4P50479 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM4P50479 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM4P50479 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.89■□□□□ 0.61
PDLIM4P50479 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM4P50479 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM4P50479 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
PDLIM4P50479 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PDLIM4P50479 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.88■□□□□ 0.61
PDLIM4P50479 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDLIM4P50479 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.88■□□□□ 0.61
PDLIM4P50479 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDLIM4P50479 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM4P50479 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.87■□□□□ 0.61
PDLIM4P50479 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM4P50479 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
PDLIM4P50479 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.87■□□□□ 0.61
PDLIM4P50479 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.87■□□□□ 0.61
PDLIM4P50479 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.87■□□□□ 0.61
PDLIM4P50479 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.87■□□□□ 0.61
PDLIM4P50479 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM4P50479 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM4P50479 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PDLIM4P50479 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.86■□□□□ 0.61
PDLIM4P50479 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.86■□□□□ 0.61
PDLIM4P50479 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM4P50479 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.86■□□□□ 0.61
PDLIM4P50479 AC087623.3-201ENST00000607047 1098 ntBASIC18.86■□□□□ 0.61
PDLIM4P50479 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
PDLIM4P50479 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM4P50479 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM4P50479 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM4P50479 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM4P50479 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM4P50479 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM4P50479 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.85■□□□□ 0.61
PDLIM4P50479 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM4P50479 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.85■□□□□ 0.61
PDLIM4P50479 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM4P50479 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM4P50479 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
PDLIM4P50479 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.84■□□□□ 0.61
PDLIM4P50479 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
PDLIM4P50479 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.84■□□□□ 0.61
PDLIM4P50479 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.84■□□□□ 0.61
PDLIM4P50479 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PDLIM4P50479 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.84■□□□□ 0.61
PDLIM4P50479 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PDLIM4P50479 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.84■□□□□ 0.61
PDLIM4P50479 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PDLIM4P50479 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.83■□□□□ 0.61
PDLIM4P50479 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PDLIM4P50479 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM4P50479 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM4P50479 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
PDLIM4P50479 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.83■□□□□ 0.6
PDLIM4P50479 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.83■□□□□ 0.6
PDLIM4P50479 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM4P50479 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM4P50479 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM4P50479 AC068473.5-201ENST00000616428 2072 ntBASIC18.83■□□□□ 0.6
PDLIM4P50479 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM4P50479 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
PDLIM4P50479 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM4P50479 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM4P50479 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM4P50479 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.82■□□□□ 0.6
PDLIM4P50479 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM4P50479 TSPY26P-201ENST00000476365 1326 ntBASIC18.82■□□□□ 0.6
PDLIM4P50479 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
PDLIM4P50479 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM4P50479 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.82■□□□□ 0.6
PDLIM4P50479 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PDLIM4P50479 SLC47A1P1-202ENST00000449666 945 ntBASIC18.82■□□□□ 0.6
PDLIM4P50479 AL162430.1-201ENST00000480705 870 ntBASIC18.82■□□□□ 0.6
PDLIM4P50479 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM4P50479 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms